View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_40 (Length: 254)
Name: NF3762_high_40
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5763081 - 5763317
Alignment:
| Q |
1 |
attaaatttgtcaaaagaagtatgccactttgttatgctaattttaaaaatatctatggaaactggaaaggtgannnnnnnnnnnnacattcgtgtatca |
100 |
Q |
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| T |
5763081 |
attaaatttgtcaaaagaagtatgccactttgttatgctaatttttaaaatatctatggaaa-------ggtgattttttctttttacattcgtgtatca |
5763173 |
T |
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| Q |
101 |
aatcaaattaaactttacgtgtaaaaatgaatcttgatatgaaaatgaatgagtcagtatttgaataaatacccttgtttattgccattcaacttcccac |
200 |
Q |
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| T |
5763174 |
aatcaaattaaactttacgtgtaaaaatgaatcttgatatgaaaatgaatgagtcagtatttgaataaatacccttgtttattgccattcaacttcccac |
5763273 |
T |
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| Q |
201 |
tttactctaacccacaatatggcacataacactgaggttgatga |
244 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5763274 |
tttactctaactcacaatatggcacataacactgaggttgatga |
5763317 |
T |
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