View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_high_52 (Length: 227)

Name: NF3762_high_52
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_high_52
NF3762_high_52
[»] chr3 (16 HSPs)
chr3 (1-227)||(6897564-6897790)
chr3 (1-215)||(6880004-6880218)
chr3 (2-186)||(6851386-6851570)
chr3 (1-227)||(6235523-6235749)
chr3 (1-222)||(6242803-6243019)
chr3 (1-148)||(6166451-6166599)
chr3 (3-221)||(6139770-6139986)
chr3 (3-111)||(6263274-6263382)
chr3 (3-205)||(6593682-6593882)
chr3 (3-184)||(6256721-6256902)
chr3 (4-221)||(13275734-13275951)
chr3 (1-127)||(6914677-6914803)
chr3 (3-66)||(6724408-6724471)
chr3 (171-217)||(6166384-6166430)
chr3 (1-38)||(6557045-6557082)
chr3 (1-38)||(7585536-7585573)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-186)||(13819-14002)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6897790 - 6897564
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6897790 gagagtgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 6897691  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    ||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  6897690 atctgtttatacttgtcaaacattagtatattttctcttacatagtaaaaattattcataagatactatcttttatgttgaacagtgcacggtgtttgtg 6897591  T
Q  201 atataagttacaatggtgtttcagacc 227  Q
    ||||| || ||||||||||||||||||    
T  6897590 atatatgtaacaatggtgtttcagacc 6897564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 6880218 - 6880004
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  |||    
T  6880218 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgataggcggctgagatgagatgttattgtagccaggtgcaccacatttccca 6880119  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  6880118 atctgtttatacttgtcaaacattagtatattttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtgcacggtgtttgtg 6880019  T
Q  201 atataagttacaatg 215  Q
    ||||| ||| |||||    
T  6880018 atatatgttgcaatg 6880004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 6851386 - 6851570
Alignment:
Q  2 agagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaa 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||     
T  6851386 agagcattggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattgtagccaggtgcaccacatttcccag 6851485  T
Q  102 tctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagt 186  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  6851486 tctgtttatacttgtcaaacattagtatattttctcttagatagtaaaaattattcattagatactatcttttatgttgaacagt 6851570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6235749 - 6235523
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||  |||    
T  6235749 gagagcgttggcatacaatttctcacattccttatgtgacaatttcctgattggcagctgagatgagatgttattgtagccaggtgcaccacatttccca 6235650  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||| || || |   |||| | |||||||||||||||| ||| ||  |||||    
T  6235649 atctgtttatacttgtcaaacattagtaaattttcttttaaatagtaaaaataatgcacagcctactgtgttttatgttgaacagtgcacggttgttgtg 6235550  T
Q  201 atataagttacaatggtgtttcagacc 227  Q
    ||||| ||| |||||| ||||| ||||    
T  6235549 atatatgtttcaatggcgtttctgacc 6235523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6243019 - 6242803
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    |||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||     ||||| |||||||||||| |||||||||||    
T  6243019 gagagcgttggcatacaatttgtcacatccctaacgtgacaatttcctgattggcggctgagatg-----ttattgtagccaggtgcagcacattcacca 6242925  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    ||||||||||| ||||||||||||||||   ||||| ||||| ||||||||| || || || ||||| | |||||||||||||||| ||| |||||||||    
T  6242924 atctgtttatagttgtcaaacattagtatattttcttttaaacagtaaaaataatgcacaacatactgtgttttatgttgaacagtgcactgtgtttgtg 6242825  T
Q  201 atataagttacaatggtgtttc 222  Q
    ||||| ||| ||||||||||||    
T  6242824 atatatgtttcaatggtgtttc 6242803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6166599 - 6166451
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  6166599 gagaacgtaggcatacaattagtcacattcctgatgtgacaatttcctgattggcagctgatatgagatgttattgtagccaggtgcaccacattcacca 6166500  T
Q  101 atctgttt-atacttgtcaaacattagtaatatttctcttaaatagtaa 148  Q
    |||||||| ||  |||||||||||||||||  ||||| |||||||||||    
T  6166499 atctgtttaattgttgtcaaacattagtaaattttcttttaaatagtaa 6166451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 6139986 - 6139770
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    ||||||||||||||||||  ||| || |||  ||| ||||||||||||||| ||||||||||||||||||||| |  |||||||||| ||||||||||||    
T  6139986 gagcgttggcatacaatttctcatatcccttctgtcacaatttcctgattgacggctgagatgagatgttattttttccaggtgcacaacattcaccaat 6139887  T
Q  103 ctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtgat 202  Q
    ||||||||| |||||||||||||||||  ||||| ||||||||||||| | || |  |   |||| | ||||||||||| |||| ||| |||||||||||    
T  6139886 ctgtttatagttgtcaaacattagtaaattttcttttaaatagtaaaattaatgc--agtgtactgtgttttatgttgatcagtgcacggtgtttgtgat 6139789  T
Q  203 ataagttacaatggtgttt 221  Q
    ||| ||| |||||||||||    
T  6139788 atatgtttcaatggtgttt 6139770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 6263382 - 6263274
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  6263382 gagcgttggcatacaatttctcacattccttatgtgacaatttcctgattggcagctgagatgagatgttattgtagccaggtgcacaacattcaccaat 6263283  T
Q  103 ctgtttata 111  Q
    |||||||||    
T  6263282 ctgtttata 6263274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 6593682 - 6593882
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| ||||||| |||||||||||||| |||||||||||    
T  6593682 gagcattggcataaaattagtcacattcctgatgtaacaatttcctgattagcggttgggatgagctgttattgtagccaggtgcaccgcattcaccaat 6593781  T
Q  103 ctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtgat 202  Q
     ||||||||||||||||| ||| || | |||||| | ||||  | | ||| || || |||||||||| |||||| ||||||||| ||  |||||||||||    
T  6593782 ttgtttatacttgtcaaagatttgtga-atttctgtcaaatcat-acaataatgcacaagatactatgttttatcttgaacagtgcatggtgtttgtgat 6593879  T
Q  203 ata 205  Q
    |||    
T  6593880 ata 6593882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 6256902 - 6256721
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    |||| |||||||||||||  |||||| ||| |||||| ||||||||||||||| |||||||| |||| ||||| ||| ||||||||| ||||||||||||    
T  6256902 gagcattggcatacaatttctcacatcccttatgtgataatttcctgattggcagctgagatcagattttattgtagacaggtgcacaacattcaccaat 6256803  T
Q  103 ctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaaca 184  Q
    ||||||||| |||||||||||||||||  || || |  ||||||||||||||| |||||  |||| | |||||| |||||||    
T  6256802 ctgtttatagttgtcaaacattagtaaatttcctttcgaatagtaaaaattatgcataacgtactgtgttttattttgaaca 6256721  T

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Target: chr3; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 13275734 - 13275951
Alignment:
Q  4 agcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaatc 103  Q
    |||||||||||||||||  ||| || |||  ||| ||||||||||||||| ||||||||||||||||||||| |  |||||||||| | |||||||||||    
T  13275734 agcgttggcatacaatttctcatatcccttctgtcacaatttcctgattgacggctgagatgagatgttattttttccaggtgcacgatattcaccaatc 13275833  T
Q  104 tgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtgata 203  Q
    |||||||| ||||| |||||||||||  ||||| ||||||||| ||| | || || ||  |||| | ||||||||||| ||   ||  ||||||||||||    
T  13275834 tgtttatagttgtcgaacattagtaaattttcttttaaatagtgaaattaatgcacaacgtactgtgttttatgttgatcaagtcatggtgtttgtgata 13275933  T
Q  204 taagttacaatggtgttt 221  Q
    || ||| | |||||||||    
T  13275934 tatgtttctatggtgttt 13275951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 6914803 - 6914677
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||||||||||||| |||| ||||||| |||   ||||||||||| ||||| | ||||||||| |||||||||| || ||||||||||||||||||  |    
T  6914803 gagagcgttggcatagaatttgtcacatcccttccgtgacaatttcttgatttgaggctgagatcagatgttattgtatccaggtgcaccacattcaata 6914704  T
Q  101 atctgtttatacttgtcaaacattagt 127  Q
    ||||||||||  | |||||||| ||||    
T  6914703 atctgtttattttagtcaaacaatagt 6914677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 6724408 - 6724471
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatga 66  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  6724408 gagctttggcatacaattagtcacattcctgatgtaacaatttcctgattggcggctgggatga 6724471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 6166430 - 6166384
Alignment:
Q  171 ttttatgttgaacagtacacagtgtttgtgatataagttacaatggt 217  Q
    |||||||||||||||| ||| |||||||||||||| ||| |||||||    
T  6166430 ttttatgttgaacagtgcacggtgtttgtgatatatgtttcaatggt 6166384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6557045 - 6557082
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtg 38  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  6557045 gagagcgttggcatacaattagtcacatcccttatgtg 6557082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7585573 - 7585536
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtg 38  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7585573 gagagcgttggcatacaattagtcacatccctggtgtg 7585536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13819 - 14002
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||    
T  13819 gagagcattggcatacaattagtcac-ttcctgatgtgacaatttcctgattggcggctgagatgagatgttattgtagccaggtgcaccacatttccca 13917  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagt 186  Q
     |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  13918 gtctgtttatacttgtcaaacattagt-atatttctcttagatagtaaaaattattcattagatactatcttttatgttgaacagt 14002  T

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