View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_53 (Length: 220)
Name: NF3762_high_53
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_53 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 27826007 - 27825865
Alignment:
| Q |
16 |
agatcaaattatatactagttgacaaaatattgttcaatatttatggcgaacccaaattatacgtgaatgtttgatttcaattttggagaggttaaaatt |
115 |
Q |
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| T |
27826007 |
agatcaaattatatactagttgataaaatattgttcaatatttatgacgaacccaaatta--cgtgtatgtttgatttcaattttggagaggttaaattt |
27825910 |
T |
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| Q |
116 |
gattttaaagatatagaattgactttgacacggttcaatatgttc |
160 |
Q |
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| T |
27825909 |
gattttaaagatatagaattgactttgacacggttcaatgtgttc |
27825865 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 27825693 - 27825652
Alignment:
| Q |
155 |
atgttcaagtataattgattttacatgtcgaattgattttac |
196 |
Q |
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| T |
27825693 |
atgttcaagaataattgattttacatgtcgaattgattttac |
27825652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 147754 - 147795
Alignment:
| Q |
84 |
tgtttgatttcaattttggagaggttaaaattgattttaaag |
125 |
Q |
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| T |
147754 |
tgtttgatttcaattttgtaggggttaaaattaattttaaag |
147795 |
T |
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