View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_high_55 (Length: 202)

Name: NF3762_high_55
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_high_55
NF3762_high_55
[»] chr4 (9 HSPs)
chr4 (3-191)||(52413496-52413685)
chr4 (1-168)||(52408271-52408439)
chr4 (11-60)||(51707480-51707529)
chr4 (8-56)||(51708195-51708243)
chr4 (8-59)||(13921835-13921886)
chr4 (10-59)||(13922561-13922610)
chr4 (1-67)||(24377200-24377266)
chr4 (8-56)||(2039383-2039431)
chr4 (1-29)||(53732431-53732459)
[»] chr3 (13 HSPs)
chr3 (47-191)||(7772051-7772195)
chr3 (1-135)||(7777336-7777469)
chr3 (7-58)||(2949040-2949091)
chr3 (8-56)||(10702885-10702933)
chr3 (1-53)||(19227457-19227509)
chr3 (4-38)||(7772021-7772055)
chr3 (7-59)||(52696076-52696129)
chr3 (16-59)||(33291832-33291875)
chr3 (16-59)||(46889487-46889530)
chr3 (1-34)||(13933671-13933704)
chr3 (10-59)||(33292451-33292500)
chr3 (1-29)||(21726763-21726791)
chr3 (1-29)||(21727558-21727586)
[»] chr6 (6 HSPs)
chr6 (4-135)||(13252757-13252888)
chr6 (8-54)||(6106920-6106966)
chr6 (8-59)||(15882152-15882203)
chr6 (8-59)||(10092445-10092496)
chr6 (1-59)||(6107699-6107757)
chr6 (1-29)||(19323795-19323823)
[»] scaffold1862 (1 HSPs)
scaffold1862 (3-86)||(12-95)
[»] chr1 (20 HSPs)
chr1 (27-150)||(12226462-12226585)
chr1 (7-60)||(1478553-1478606)
chr1 (1-60)||(1159068-1159127)
chr1 (2-60)||(1477951-1478009)
chr1 (2-60)||(35597536-35597594)
chr1 (7-60)||(35596938-35596991)
chr1 (8-55)||(42987166-42987213)
chr1 (7-60)||(23740511-23740564)
chr1 (1-62)||(48117878-48117938)
chr1 (8-56)||(23626076-23626124)
chr1 (4-59)||(34082900-34082955)
chr1 (7-56)||(23648084-23648135)
chr1 (8-54)||(23621665-23621711)
chr1 (9-56)||(23733402-23733451)
chr1 (1-29)||(7559228-7559256)
chr1 (7-56)||(23616743-23616794)
chr1 (8-60)||(23625849-23625901)
chr1 (8-60)||(23738418-23738470)
chr1 (1-29)||(27256741-27256769)
chr1 (1-29)||(46391895-46391923)
[»] chr7 (9 HSPs)
chr7 (1-60)||(47171404-47171463)
chr7 (7-82)||(9268897-9268972)
chr7 (7-70)||(40496390-40496453)
chr7 (1-59)||(38099236-38099294)
chr7 (7-68)||(9269928-9269989)
chr7 (8-54)||(33781601-33781647)
chr7 (1-29)||(13785622-13785650)
chr7 (1-29)||(19068424-19068452)
chr7 (1-29)||(30661484-30661512)
[»] scaffold0434 (1 HSPs)
scaffold0434 (1-59)||(12867-12925)
[»] chr2 (16 HSPs)
chr2 (9-59)||(12001083-12001133)
chr2 (38-86)||(38411100-38411148)
chr2 (8-59)||(42651296-42651347)
chr2 (2-60)||(3667448-3667506)
chr2 (15-60)||(3666868-3666913)
chr2 (7-59)||(38248088-38248140)
chr2 (8-60)||(39847132-39847184)
chr2 (1-60)||(3383120-3383179)
chr2 (1-52)||(19405323-19405374)
chr2 (8-59)||(19424184-19424235)
chr2 (1-59)||(4834775-4834833)
chr2 (10-59)||(18883873-18883922)
chr2 (1-29)||(9540327-9540355)
chr2 (1-29)||(15902116-15902144)
chr2 (1-29)||(29719442-29719470)
chr2 (23-59)||(38248931-38248967)
[»] chr8 (9 HSPs)
chr8 (8-60)||(3029259-3029311)
chr8 (3-70)||(19475152-19475219)
chr8 (3-70)||(19546077-19546144)
chr8 (3-70)||(19586552-19586619)
chr8 (7-60)||(3028670-3028723)
chr8 (7-59)||(44622262-44622314)
chr8 (1-44)||(10854022-10854065)
chr8 (1-53)||(40377013-40377065)
chr8 (11-53)||(44621612-44621654)
[»] chr5 (3 HSPs)
chr5 (21-59)||(16133579-16133617)
chr5 (1-29)||(10554517-10554545)
chr5 (1-29)||(27364515-27364543)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-29)||(27555-27583)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 52413685 - 52413496
Alignment:
Q  3 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  52413685 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcatatatctcgctaaata 52413586  T
Q  103 taacaattagaaactcacgtgacactttttcc-ctgcaaaatcatcttatgatcttactttgttcctctcctcactgtcatcgacctttg 191  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||  ||| ||||||||||||| ||||||||||||| ||||||||    
T  52413585 taacaattagaaactcacgtgacacttttccctctgcaaaatcatctttcgatgttactttgttcctttcctcactgtcattgacctttg 52413496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 52408271 - 52408439
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||    
T  52408271 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcatatatctcgctaaa 52408370  T
Q  101 tataacaattagaaactcacgtgacactttttcc-ctgcaaaatcatcttatgatcttactttgttcct 168  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||  ||| |||||||||||||    
T  52408371 tataacaattagaaactcacgtgacacttttccctctgcaaaatcatctttcgatgttactttgttcct 52408439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 51707480 - 51707529
Alignment:
Q  11 atccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  51707480 atccgttgacaccaggtgtaagtctaaagatttacaccaaatctgaaccg 51707529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 51708243 - 51708195
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctca 56  Q
    ||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  51708243 aggatccgttgacaccatgtgtaagtcaaaagacttacatcaaatctca 51708195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 13921835 - 13921886
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||||||| |||||||| || ||| |||||||||||||||||    
T  13921835 aggatccgttgacaccagatgtaagtctaatgacatacaccaaatctcaacc 13921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 13922610 - 13922561
Alignment:
Q  10 gatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||||| | |||||| || |||||||||||||||||||||    
T  13922610 gatccgttgacaccagatctaagtctaatgacttacaccaaatctcaacc 13922561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24377266 - 24377200
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaatt 67  Q
    ||||| ||||||||||||||||||  | |||||| ||||||||||||| ||| ||| ||| ||||||    
T  24377266 atgaggcaggatccgttgacaccatatataagtctaaagacttacaccgaatttcatccgtttaatt 24377200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2039383 - 2039431
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctca 56  Q
    |||||||||||||||| | |||||||   ||||||||||||||||||||    
T  2039383 aggatccgttgacaccggctgtaagtgataagacttacaccaaatctca 2039431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 53732431 - 53732459
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  53732431 atgagacaggatccgttgacaccaggtgt 53732459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 47 - 191
Target Start/End: Original strand, 7772051 - 7772195
Alignment:
Q  47 ccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaatataacaattagaaactcacgtgacactttttccctgcaaaatcat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7772051 ccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaatataacaattagaaactcacgtgacactttttccctgcaaaatcat 7772150  T
Q  147 cttatgatcttactttgttcctctcctcactgtcatcgacctttg 191  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  7772151 cttacgatcttactttgttcctctcctcactgtcatcgacctttg 7772195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 7777469 - 7777336
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaa 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7777469 atgagacaagatccgttgacaccaggtgtaagtccaa-gacttacaccaaatctcaaccgctaaattaaacaaatcctacggctcacatgtcttgctaaa 7777371  T
Q  101 tataacaattagaaactcacgtgacactttttccc 135  Q
    |||||||||||||||||||||||||||||||||||    
T  7777370 tataacaattagaaactcacgtgacactttttccc 7777336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 2949040 - 2949091
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaac 58  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2949040 caggatccgttgacaccaggtgtaagtctaatgacttacaccaaatctcaac 2949091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 10702885 - 10702933
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctca 56  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||    
T  10702885 aggatccgttgacaccaggtgtaattctaatgacttacaccaaatctca 10702933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19227457 - 19227509
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatc 53  Q
    ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  19227457 atgaggcaggatccgtttacaccagatgtaagtcaaaagacttacaccaaatc 19227509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 7772021 - 7772055
Alignment:
Q  4 agacaggatccgttgacaccaggtgtaagtccaaa 38  Q
    |||||||||||||||||||||||||||||||||||    
T  7772021 agacaggatccgttgacaccaggtgtaagtccaaa 7772055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 52696129 - 52696076
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtc-caaagacttacaccaaatctcaacc 59  Q
    ||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  52696129 caggatccgttgacaacaggtgtaagtcaaaaaaacttacaccaaatctcaacc 52696076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 33291832 - 33291875
Alignment:
Q  16 ttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||    
T  33291832 ttgacactaggtgtaagtcaaaaaacttacaccaaatctcaacc 33291875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 46889487 - 46889530
Alignment:
Q  16 ttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||| |||||||| |||||||||||| |||||||||||    
T  46889487 ttgacaccagatgtaagtcgaaagacttacacaaaatctcaacc 46889530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13933704 - 13933671
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtc 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  13933704 atgagacaggatccgttgacatcaggtgtaagtc 13933671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 33292500 - 33292451
Alignment:
Q  10 gatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||||| | ||| || |||||||||||| |||||||||||    
T  33292500 gatccgttgacaccagatataaatcaaaagacttacactaaatctcaacc 33292451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21726763 - 21726791
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  21726763 atgagacaggatccgttgacaccaggtgt 21726791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21727586 - 21727558
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  21727586 atgagacaggatccgttgacaccaggtgt 21727558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 13252888 - 13252757
Alignment:
Q  4 agacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaatat 103  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13252888 agacaggatccgcagacaccaggtgtaagtccaaagacttacaccaaatctcaaccgctaaattaaacaaatcctacggctcacatgtcttgctaaatat 13252789  T
Q  104 aacaattagaaactcacgtgacactttttccc 135  Q
    ||||||||||||||||||||||||||||||||    
T  13252788 aacaattagaaactcacgtgacactttttccc 13252757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 6106920 - 6106966
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatct 54  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  6106920 aggatccgttgacaccaggtgtaagtcaaaagacttacatcaaatct 6106966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 15882152 - 15882203
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  15882152 aggatccattgacaccaggtgtaagtctaatgacatacaccaaatctcaacc 15882203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 10092496 - 10092445
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||| ||||||||||||| ||||||||  ||||||||||| |||||||||||    
T  10092496 aggacccgttgacaccagatgtaagtcataagacttacactaaatctcaacc 10092445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6107757 - 6107699
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||| ||| ||||| |||||||||||||||||| ||||||||||  ||||||| ||||    
T  6107757 atgagtcagtatccgctgacaccaggtgtaagtcaaaagacttacgtcaaatctgaacc 6107699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19323823 - 19323795
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  19323823 atgagacaggatccgttgacaccaggtgt 19323795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1862 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 95 - 12
Alignment:
Q  3 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctca 12  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 12226462 - 12226585
Alignment:
Q  27 tgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacggctcacatgtcttgctaaatataacaattagaaa-ctcacgtgac 125  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||| || || | | | || ||||||||||||||||||||||||| ||| ||||||    
T  12226462 tgtaagtctaaagacttacaccaaatctcaacggcttaattaaacaaaccccacagatgatatatcttgctaaatataacaattagaaacctcgcgtgac 12226561  T
Q  126 actttttccctgcaaaatcatctta 150  Q
    || |||||||| ||||||| |||||    
T  12226562 ac-ttttcccttcaaaatcttctta 12226585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 1478606 - 1478553
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1478606 caggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatctcaaccg 1478553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1159068 - 1159127
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1159068 atgagacagtatccgttgacatcaggtgtaagtcaaaagacttacaccaaatctcaaccg 1159127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 1477951 - 1478009
Alignment:
Q  2 tgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  1477951 tgagtcaggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccg 1478009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 35597594 - 35597536
Alignment:
Q  2 tgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  35597594 tgagtcaggatccgttgacaccaggtgtaagtcaaaagatttacaccaaatcttaaccg 35597536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 35596938 - 35596991
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  35596938 caggatccgttgacaccggatgtaagtcaaaagacttacaccaaatctcaaccg 35596991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 42987166 - 42987213
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctc 55  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  42987166 aggatccgttgacaccaggtgtaagtcaaatgacttacaccaaatctc 42987213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 23740511 - 23740564
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||| |||||    
T  23740511 caggatccgttgacaccaggtttaagtcaaaagacttacactaaatctaaaccg 23740564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48117938 - 48117878
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgct 62  Q
    ||||| ||| ||||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  48117938 atgaggcagaatccgttgacaccaggtgtaagt-cattgacttacaccaaatctcaaccgct 48117878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 23626076 - 23626124
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctca 56  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  23626076 aggatccgttgacaccaggtgtaagtcaaaacatttacaccaaatctca 23626124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 34082955 - 34082900
Alignment:
Q  4 agacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||| ||||||||||||| |||||||||||   ||||||||||||||||||||||    
T  34082955 agacaagatccgttgacactaggtgtaagtcattagacttacaccaaatctcaacc 34082900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 23648084 - 23648135
Alignment:
Q  7 caggatccgttgacaccag--gtgtaagtccaaagacttacaccaaatctca 56  Q
    |||||||||||||||||||  ||||||||| ||||| |||||||||||||||    
T  23648084 caggatccgttgacaccaggtgtgtaagtcaaaagatttacaccaaatctca 23648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 23621665 - 23621711
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatct 54  Q
    ||||||||||||||||||||||||||   |||||||||| |||||||    
T  23621665 aggatccgttgacaccaggtgtaagtatgaagacttacaacaaatct 23621711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 23733402 - 23733451
Alignment:
Q  9 ggatccgttgacaccaggtgt--aagtccaaagacttacaccaaatctca 56  Q
    |||||||||||||||||||||  ||||| ||||| |||||||||||||||    
T  23733402 ggatccgttgacaccaggtgtgtaagtcaaaagatttacaccaaatctca 23733451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7559256 - 7559228
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  7559256 atgagacaggatccgttgacaccaggtgt 7559228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 23616743 - 23616794
Alignment:
Q  7 caggatccgttgacaccaggtgt--aagtccaaagacttacaccaaatctca 56  Q
    ||||||||||||||| |||||||  ||||| ||||| |||||||||||||||    
T  23616743 caggatccgttgacatcaggtgtgtaagtcaaaagatttacaccaaatctca 23616794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 23625849 - 23625901
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||||||||||||| |||| ||| ||||| |||||| |||||| |||||    
T  23625849 aggatccgttgacaccagatgtatgtcaaaagatttacactaaatctaaaccg 23625901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 23738418 - 23738470
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||| ||||||||||||||||||||  || |||| ||| ||||||||||||    
T  23738418 aggatctgttgacaccaggtgtaagtctgaaaacttccactaaatctcaaccg 23738470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27256769 - 27256741
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  27256769 atgagacaggatccgttgacaccaggtgt 27256741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 46391923 - 46391895
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  46391923 atgagacaggatccgttgacaccaggtgt 46391895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 47171463 - 47171404
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  47171463 atgagtcaggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccg 47171404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 9268897 - 9268972
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaacaaatcctacgg 82  Q
    ||||||||||||||||||||||||||||  |  ||||||||||||||||||||| | || | |||||||| |||||    
T  9268897 caggatccgttgacaccaggtgtaagtcatataacttacaccaaatctcaaccgttaaaattaacaaatcttacgg 9268972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 40496453 - 40496390
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaa 70  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||  ||||| | |||||||    
T  40496453 caggatccgttgacatcaggtgtaagtcaaaagacttacaccaaatcagaaccgttaaattaaa 40496390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38099294 - 38099236
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||| || |||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  38099294 atgagtcatgatccgttgataccaggtgtaagtcaaaagacttgcaccaaatctcaacc 38099236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 9269989 - 9269928
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaatta 68  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||  |||||||    
T  9269989 caggatccgttgtcaccaggtgtaagtcaaaagacttacaacaaatatcaaccatttaatta 9269928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 33781601 - 33781647
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatct 54  Q
    |||||||||||||| ||||| |||||| || ||||||||||||||||    
T  33781601 aggatccgttgacatcaggtataagtctaatgacttacaccaaatct 33781647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13785650 - 13785622
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  13785650 atgagacaggatccgttgacaccaggtgt 13785622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19068452 - 19068424
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  19068452 atgagacaggatccgttgacaccaggtgt 19068424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30661512 - 30661484
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  30661512 atgagacaggatccgttgacaccaggtgt 30661484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12867 - 12925
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  12867 atgagacaggatccgttgacaccatgtgtaagttaaaagacttacaccaaatctcaacc 12925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 12001083 - 12001133
Alignment:
Q  9 ggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12001083 ggatccgttgacaccaggtgtaagtcaaaagacttacaccaaatctcaacc 12001133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 38411100 - 38411148
Alignment:
Q  38 agacttacaccaaatctcaaccgcttaattaaacaaatcctacggctca 86  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  38411100 agacttacaccaaatctcaaccgtttgattaaacaaatcctacggctca 38411148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 42651347 - 42651296
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  42651347 aggatccgttgatatcaggtgtaagtcaaaagacttacaccaaatctcaacc 42651296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 3667506 - 3667448
Alignment:
Q  2 tgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||| ||||||||||||||||||||||||| || |||||||||| | ||||||||||||    
T  3667506 tgagtcaggatccgttgacaccaggtgtaaatcaaaagacttactctaaatctcaaccg 3667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 3666868 - 3666913
Alignment:
Q  15 gttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  3666868 gttgacaccaggtgtaagtcaaaagacttacaccaaatcttaaccg 3666913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 38248088 - 38248140
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||||||||||||||||| |||||||| ||  |||||||| |||||||||||    
T  38248088 caggatccgttgacaccagatgtaagtcgaataacttacactaaatctcaacc 38248140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 39847132 - 39847184
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    ||||||| ||||||||||||| ||||| || |||||| |||||||||||||||    
T  39847132 aggatccattgacaccaggtgcaagtcaaatgacttataccaaatctcaaccg 39847184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3383179 - 3383120
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||| ||||| |||| || |||||||||||  || |||||||||||||||||||||    
T  3383179 atgagacatgatccattgagactaggtgtaagtcttaatacttacaccaaatctcaaccg 3383120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19405323 - 19405374
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaat 52  Q
    ||||| |||||||  ||||||||||||||||||  |||||||||||||||||    
T  19405323 atgaggcaggatctattgacaccaggtgtaagttaaaagacttacaccaaat 19405374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 19424235 - 19424184
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||||||||||||||||||||||| | |||| ||| |||||||| ||||||    
T  19424235 aggatccgttgacaccaggtgtaagccaaaaggctttcaccaaatttcaacc 19424184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4834833 - 4834775
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||| ||||||| |||||||||| |||||||||   ||| ||||||||||||||||||    
T  4834833 atgaggcaggatctgttgacaccatgtgtaagtcattagaattacaccaaatctcaacc 4834775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 18883922 - 18883873
Alignment:
Q  10 gatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||||||||||||||    ||||| |||||||||||||||    
T  18883922 gatccgttgacaccaggtgtaagtcatttgacttgcaccaaatctcaacc 18883873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9540327 - 9540355
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  9540327 atgagacaggatccgttgacaccaggtgt 9540355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15902116 - 15902144
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  15902116 atgagacaggatccgttgacaccaggtgt 15902144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29719442 - 29719470
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  29719442 atgagacaggatccgttgacaccaggtgt 29719470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 38248967 - 38248931
Alignment:
Q  23 caggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||| || |||||||||||||||||||||    
T  38248967 caggtgtaagtctaatgacttacaccaaatctcaacc 38248931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 3029311 - 3029259
Alignment:
Q  8 aggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  3029311 aggatccgttgacaccagatgtaagtcaaaagacttacaccaaatctcaaccg 3029259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 19475219 - 19475152
Alignment:
Q  3 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaa 70  Q
    ||||||| |||||||||||||||||||||||| || ||||| |||||||||||| ||| | |||||||    
T  19475219 gagacagtatccgttgacaccaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaa 19475152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 19546144 - 19546077
Alignment:
Q  3 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaa 70  Q
    ||||||| |||||||||||||||||||||||| || ||||| |||||||||||| ||| | |||||||    
T  19546144 gagacagtatccgttgacaccaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaa 19546077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 19586552 - 19586619
Alignment:
Q  3 gagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccgcttaattaaa 70  Q
    ||||||| |||||||||||||||||||||||| || ||||| |||||||||||| ||| | |||||||    
T  19586552 gagacagtatccgttgacaccaggtgtaagtctaatgacttgcaccaaatctcagccgttaaattaaa 19586619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3028670 - 3028723
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaaccg 60  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  3028670 caggatccgttgacaccaggtgtaagttaaaagagttacaccaaatcttaaccg 3028723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 44622314 - 44622262
Alignment:
Q  7 caggatccgttgacaccaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||| ||||    
T  44622314 caggatccgttgacaccaggtttaagtcttaagacttacaccaaatcttaacc 44622262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10854022 - 10854065
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagactta 44  Q
    ||||| |||||||||||||||||||||||||||| |||||||||    
T  10854022 atgagtcaggatccgttgacaccaggtgtaagtcaaaagactta 10854065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40377065 - 40377013
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgtaagtccaaagacttacaccaaatc 53  Q
    |||||||| ||| |||| |||||||||||||||| ||||| ||||||||||||    
T  40377065 atgagacatgattcgttaacaccaggtgtaagtctaaagaattacaccaaatc 40377013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 44621612 - 44621654
Alignment:
Q  11 atccgttgacaccaggtgtaagtccaaagacttacaccaaatc 53  Q
    |||||||||||||||||||||||| |||| ||| |||||||||    
T  44621612 atccgttgacaccaggtgtaagtctaaaggcttgcaccaaatc 44621654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 16133579 - 16133617
Alignment:
Q  21 accaggtgtaagtccaaagacttacaccaaatctcaacc 59  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  16133579 accaggtgtaagtgtaaagacttacaccaaatctcaacc 16133617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10554517 - 10554545
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  10554517 atgagacaggatccgttgacaccaggtgt 10554545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27364543 - 27364515
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  27364543 atgagacaggatccgttgacaccaggtgt 27364515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27583 - 27555
Alignment:
Q  1 atgagacaggatccgttgacaccaggtgt 29  Q
    |||||||||||||||||||||||||||||    
T  27583 atgagacaggatccgttgacaccaggtgt 27555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University