View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_7 (Length: 606)
Name: NF3762_high_7
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 289 - 597
Target Start/End: Complemental strand, 25501882 - 25501577
Alignment:
| Q |
289 |
taagggtgtgtttaggaggaaatcaccaaattggtctttgacnnnnnnnnnnnnggcggtctcaaattagtatctaaggtcacaaatttaaaataacttc |
388 |
Q |
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| T |
25501882 |
taagggtgtgtttaggaggaaatcaccaaattggtctttgactatata------ggcggtctcaaattagtatctaaggtcacaaatttaaaataacttc |
25501789 |
T |
|
| Q |
389 |
gagtactcaagttagtctatttataatctcttgacctgacacagtctcaactgctgatatggccactaaacgccctgttcaactccaagtggac---ttg |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25501788 |
gagtactcaagttagtctatttataatctcttgacctgacacagtctcaactgctgatatggccactaaacgccctgttcaactccaagtggacttgttg |
25501689 |
T |
|
| Q |
486 |
atggggttatcatgtaatatgcccaattttggggtctaaaatgaaagtctccctccaatggtaaactttataannnnnnncgaaaactcttttctcccct |
585 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
25501688 |
atggggttatcatgtcatatgcccaattttggggtctaaaatgaaagtctccctccaatggtaaactctataatttttttcgaaaactcttttctcccct |
25501589 |
T |
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| Q |
586 |
tttctcctttgc |
597 |
Q |
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|||||||||||| |
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| T |
25501588 |
tttctcctttgc |
25501577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 25502111 - 25501884
Alignment:
| Q |
32 |
gccatcttttaaatttgctcctaggcattgattttaaagcgggggagtggggattc---------------------accttatgccaagcctcaggaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25502111 |
gccatcttttaaatttgctcctaggcattgattttaaagcgggggagtggggattctcccctctcaactgagttttcaccttatgccaagcctcaggaat |
25502012 |
T |
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| Q |
111 |
caaactcatgaggtgtcaaagccccttaccatttggatcaactgcatgttggttacactctttgaagagaaaatcacatg-nnnnnnnncctttccattc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25502011 |
caaactcatgaggtgtcaaagccccttaccatttggatcaactgcatgttggttacactctttgaagagaaaatcacatgtttttttttcctttccattc |
25501912 |
T |
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| Q |
210 |
caagttatgtaaatggttgtagaaatat |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25501911 |
caagttatgtaaatggttgtagaaatat |
25501884 |
T |
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