View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_high_8 (Length: 605)
Name: NF3762_high_8
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 4110365 - 4109823
Alignment:
| Q |
1 |
ttcttattatcacacatctatatataa-taaattatattatacaagcttatgatcaattcgattactcttccatgtgttattttaatctctattagttta |
99 |
Q |
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| T |
4110365 |
ttcttattatcacacatctatatataaataaattagattatacaagcttatgatcaattcaattactcttccatgtgttattttaatctctattagttta |
4110266 |
T |
|
| Q |
100 |
aaatggcaaagctaggggtccaattgcaaaataattgagacaatgggaccccataatgaaactagaagagaagatcaatcaagtgatga---atccacaa |
196 |
Q |
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| T |
4110265 |
aaatggcaaagctaggggtccaattgcaaaataattgagacaatgggaccccataatgaaactagaagagaagatcaatcaagtgatgatgaatccacaa |
4110166 |
T |
|
| Q |
197 |
caacattgaaacagaccacatgctaaaacctccaaacaaacaacgttgtcatagtcacaaccattgatgatagatgctctcccctaacacgtgtcccctc |
296 |
Q |
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| T |
4110165 |
caacattgaaacagaccacatgctaaaacctccaaacaaacaacgttgtcatagtcacaaccattgatgatagatgctctcccctaacacgtgtcccctc |
4110066 |
T |
|
| Q |
297 |
cttaaacggcaattgagaatcatcattcacacacacccaaatcacactctctagtctactatgctatgccatg-----nnnnnnntttgaccactcacaa |
391 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
4110065 |
cttaaacggcaattgagaatcatcattcacacgcacccaaatcacactctctagtctactatgctatgccctgcccccccccccctttgaccactcacaa |
4109966 |
T |
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| Q |
392 |
cttcaacaaaaa-----------------taataagttgaaaagtcgatttagctcaactgacaataatgatattgttccttattaaaccgaatatttca |
474 |
Q |
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| T |
4109965 |
ctccaaaaaaaacaagataacaacaaaaataataagttg--aagtcgatttagctcaactgacaataatgatattgtttcttattaaaccgaatatttct |
4109868 |
T |
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| Q |
475 |
tcagactctaactcaaaacgtcgaagttgtgtgtgttttatcgac |
519 |
Q |
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| T |
4109867 |
tcagactctaactcgaaacgtcgaagttgtgtgtgttttatcgac |
4109823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 562 - 600
Target Start/End: Complemental strand, 4109780 - 4109742
Alignment:
| Q |
562 |
ctgaggttgaaattgagattaatttccatttcatctcac |
600 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
4109780 |
ctgaggttgaaattgagattaatttccatttcatttcac |
4109742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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