View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_11 (Length: 562)
Name: NF3762_low_11
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 35808534 - 35807989
Alignment:
| Q |
1 |
ctgagtttttcacttgcagtgacttcagtgataatttaagtcacagttcttcgtctcaatcgtttactcgaaatgaaactgtcgatgatttcgttcaaat |
100 |
Q |
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| T |
35808534 |
ctgagtttttcacttgcagtgacttcagtgataatttaagtcacagttcttcgtctcaatcgtttactcgaaatgaaactgtcgatgatttcgttcaaat |
35808435 |
T |
|
| Q |
101 |
tccttatatattttaatgctgttatcaccccctttcccttattttgttgtaattgttctgaattgtgtgattaatcaaaaggagtgcttctgttgtatat |
200 |
Q |
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| T |
35808434 |
tccttatatattttaatgctgttatcaccccctttcccttattttgttgtaattgttctgaattgtgtgattaatcaaaaggagtgcttctgttgtatat |
35808335 |
T |
|
| Q |
201 |
gctaataaataagaactacatgaatgatttggttttccaatttatgattcctgagttattatagaaactgctagaaaatatgattattttcttggcctat |
300 |
Q |
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| T |
35808334 |
gctaataaataagaactacatgaatgatttggttttccaatttatgattcctgagttattatagaaactgctagaaaatatgattattttcttggcctat |
35808235 |
T |
|
| Q |
301 |
ttagtttcacttttgtaccatatatgcagagtttatgtctctgcaattgcaacgcaaccgtgattggaattgcatcagtcaattttgacagtgattcttt |
400 |
Q |
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| T |
35808234 |
ttagtttcacttttgtaccatatatgcagagtttatgtctctgcaattgcaacgcaaccgtgattggaattgcatcagtcaattttgacagtgattcttt |
35808135 |
T |
|
| Q |
401 |
gttatatcaaagatcgcgacgcaacgcaaattaaaaaaccttacatatgtaaatcatgaaattctgcttctggaccaggaccatattattagataagcag |
500 |
Q |
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| T |
35808134 |
gttatatcaaagatcgcgacgcaacgcaaattaaaaaaccttacatatgtaaatcatgaaattctgcttctggaccaggaccatattattagataagcag |
35808035 |
T |
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| Q |
501 |
tttattgataacattttctgcttatcatcctttagttagttataag |
546 |
Q |
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| T |
35808034 |
tttattgataacattttctgcttatcatcctttagttagttataag |
35807989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 541
Target Start/End: Complemental strand, 44271460 - 44271406
Alignment:
| Q |
487 |
tattagataagcagtttattgataacattttctgcttatcatcctttagttagtt |
541 |
Q |
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||||||||||| ||||| |||||||| |||||| |||||||| | |||||||||| |
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| T |
44271460 |
tattagataagtagtttgttgataaccttttctccttatcattcattagttagtt |
44271406 |
T |
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