View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_12 (Length: 549)
Name: NF3762_low_12
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 172 - 538
Target Start/End: Original strand, 48007571 - 48007930
Alignment:
| Q |
172 |
tcaccaccttagcttgtaaattctgattttctgttgggaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
271 |
Q |
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| T |
48007571 |
tcaccaccttagcttgtaaattttgattttctgttggaaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
48007670 |
T |
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| Q |
272 |
aatagaaaatagggatatgatagctatatggtcgaccaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
371 |
Q |
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| T |
48007671 |
aatagaaaatagggatatgatatatatatggtcgaacaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
48007770 |
T |
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| Q |
372 |
ctcgaatatgattcttnnnnnnngatgatgtctatggtcaaactattactttcatgcattcttggttctccttctccatctaataataatagtcaaatat |
471 |
Q |
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| T |
48007771 |
ctcgaatatgattctt-aaaaaagatgatgtatatggtcaaactattactttcatgcattcttggttctccatc---------taataatagtcaaatat |
48007860 |
T |
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| Q |
472 |
tgtgctaacattgatgtcactcgcacatgagacttgcatggc---catcaaatgagatctaccattatgt |
538 |
Q |
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| T |
48007861 |
tgtgttaacattgatgtcactcgcacatgagacttgcatggccatcatcaaatgagatctaccattatgt |
48007930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 48007469 - 48007571
Alignment:
| Q |
17 |
agctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgatcatatatttattgnnnnnnnncctcaattactagtgtagctagctc |
116 |
Q |
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| T |
48007469 |
agctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgatcatatatttattgtttttttt-ctcaattactagtgtagctagctc |
48007567 |
T |
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| Q |
117 |
caat |
120 |
Q |
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| T |
48007568 |
caat |
48007571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 1604190 - 1604338
Alignment:
| Q |
113 |
gctccaatgacattcaattctacaccttacaattggacatcatatccatgtagttgcactcaccaccttagcttgtaaattctgattttctgttgggaaa |
212 |
Q |
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| T |
1604190 |
gctccaatgacattcaattctacaccttaaaattggacattatatccatgtagttgcactcaccacct-agcttgtaaattttgattttctgttgggaaa |
1604288 |
T |
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| Q |
213 |
tttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgct |
262 |
Q |
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| T |
1604289 |
ttcggatatggtacagtttttttcttgcaaggttttgtatgaaatttgct |
1604338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 1604076 - 1604129
Alignment:
| Q |
17 |
agctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgat |
70 |
Q |
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| T |
1604076 |
agctttcagaagcagaaaagggtatccttgattggcttaaagctaacaagtgat |
1604129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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