View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_13 (Length: 534)
Name: NF3762_low_13
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 21471768 - 21471522
Alignment:
| Q |
16 |
caacttcaatagataaaataaaaatatatcagatgttagcatagtggttagtgcttagctttgcaatctaaagaggcatagttcagttcagactcttagc |
115 |
Q |
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| T |
21471768 |
caacttcaatagataaaataaaaatatatcagatgttagcatagtggttagtgcttagctttgcaatctaaagaggcatagttcagttcaaactcttagc |
21471669 |
T |
|
| Q |
116 |
gaccctagcacatcggtgatcgcttggctttttaatataaaaggacatatttaggtttgattcggagactatgtggccaagtgtctctcccttcgcacta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21471668 |
gaccctagcacatcggtgatcgcttggctttttaatataaaaggacatatttaggttcgatttggagactatgtggccaagtgtctctcccttcgcacta |
21471569 |
T |
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| Q |
216 |
aataaataatatcatcccccctcctatattaatttcttaagaaaaca |
262 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21471568 |
aataaataatatcatcccccctcccatattaatttcttaagaaaaca |
21471522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 303 - 523
Target Start/End: Complemental strand, 21471527 - 21471307
Alignment:
| Q |
303 |
aaaacatgattagttacttaagctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21471527 |
aaaacatgattagttacttaagctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaatg |
21471428 |
T |
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| Q |
403 |
cggtaaagacgtcaatccttttactaatgttatcccagtaaataaactaaaaagtactctcaaatcgttattatttcatccctatgcccgttatctttca |
502 |
Q |
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| T |
21471427 |
tggtaaggacgtcaatccttttactaatgttatcccactaaatatactaaaaagtactctcgaatcgttattatttcatccctatgccagttatctttca |
21471328 |
T |
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| Q |
503 |
agcttgtgtggttcatccttt |
523 |
Q |
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||||| ||||||||||||||| |
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| T |
21471327 |
agcttttgtggttcatccttt |
21471307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 223 - 518
Target Start/End: Complemental strand, 21501729 - 21501426
Alignment:
| Q |
223 |
aatatcatcccccctcctatattaatttcttaagaaaacagatagataaaacaaaacatgattagtttcgtttgcagaacaaaacatgattagttactta |
322 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||| |||||||||| |
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| T |
21501729 |
aatatcattccccctcccatattaatttcttaagaaaacagatagataaaacaaaacataattagttttttttacataacaaaacatgagtagttactta |
21501630 |
T |
|
| Q |
323 |
a------gctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtc |
415 |
Q |
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| |||||||||| |||||| |||||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||| |||||| ||| || |
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| T |
21501629 |
actttaagctgaaattctagagattggatacacaacagctatgaaatcaataacactacgaaaatttgcataacatggtactaaatgcggtaaggacatc |
21501530 |
T |
|
| Q |
416 |
aatccttttactaatgttatcccagtaaataaact-aaaaagtactctcaaatcgttattatttcatccctatgcccgttatctttcaagcttgtgtggt |
514 |
Q |
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| T |
21501529 |
tatccttttatcaatgttttcccaccacataaactaaaaaagtattctgaaatcattattatttcatccacatgccaattatctttcaatcttctgtggt |
21501430 |
T |
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| Q |
515 |
tcat |
518 |
Q |
| |
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|||| |
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| T |
21501429 |
tcat |
21501426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 21501866 - 21501781
Alignment:
| Q |
17 |
aacttcaatagataaaataaaaatatatcagatgttagcatagtggttagtgcttagctttgcaatctaaagaggcatagttcagttca |
105 |
Q |
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||||||| |||||||||||||||||| || |||||||||||||||| | |||||||| | | |||||||||||||| ||||||||||| |
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| T |
21501866 |
aacttcagtagataaaataaaaatat--caaatgttagcatagtggtaactgcttagcat-gtaatctaaagaggcagagttcagttca |
21501781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 223 - 459
Target Start/End: Complemental strand, 46006432 - 46006184
Alignment:
| Q |
223 |
aatatcatcccccctcctatattaatttcttaagaaaacagatagataaaacaaaacatgattagtttcgtttg------cagaacaaaacatgattagt |
316 |
Q |
| |
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|||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| | |||| |
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| T |
46006432 |
aatatcattcctcctcccatgttaatttcttaagaaaacagatagataaaacaaaacatgattagttttttttttttttacataacaaaacattagtagt |
46006333 |
T |
|
| Q |
317 |
tact-----taagctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaag |
410 |
Q |
| |
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|||| |||||| |||||| |||||| |||| ||||||| ||||| | |||||| |||| |||||||||||||| |||||||| |||| |||||| | |
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| T |
46006332 |
tactaactttaagcttaaattctagagattggatccacaacatctatgtaatcaataacacagcaaaaatttgcatatcatggtacaaaatgcggtaagg |
46006233 |
T |
|
| Q |
411 |
acgtcaatccttttactaatgttatcccagtaaataaactaaaaagtac |
459 |
Q |
| |
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|| |||||||||||| ||||||| | ||| ||||| |||||||||||| |
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| T |
46006232 |
acatcaatccttttattaatgttttaccaccaaatatactaaaaagtac |
46006184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 12829551 - 12829475
Alignment:
| Q |
350 |
aacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatcctttta |
425 |
Q |
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|||||||||| | |||||| |||||||||||||||||||||||||||| |||| |||||| || |||||||||||| |
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| T |
12829551 |
aacagctatgtaatcaataacacaacaaaaatttgcataacatggtacaaaatgcggtaagaacatcaatcctttta |
12829475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 12861530 - 12861454
Alignment:
| Q |
350 |
aacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatcctttta |
425 |
Q |
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|||||||||| | |||||| |||||||||||||||||||||||||||| |||| |||||| || |||||||||||| |
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| T |
12861530 |
aacagctatgtaatcaataacacaacaaaaatttgcataacatggtacaaaatgcggtaagaacatcaatcctttta |
12861454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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