View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_14 (Length: 524)
Name: NF3762_low_14
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 41784024 - 41784526
Alignment:
| Q |
1 |
aagggtcatctctggattcatctccaccagctacaccttgttggaagacaaaaacctacgctaatgtggttaaagggattcagaataatactatgaagct |
100 |
Q |
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| T |
41784024 |
aagggtcatctctggattcatctccaccagctacaccttgttggaagacaaaaacctacgctaatgtggttaaagggattcagaataatactatgaagcg |
41784123 |
T |
|
| Q |
101 |
taaagaaacagggacttctaaacagaatattcatggttctgatattcaaagtttcaagtcctgcaacgttgatagattttcctcacacaaagcattgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41784124 |
taaagaaacagggacttctaaacagaatattcatggttctgatattcaaagtttcaagtcctgcaacgttgatagattttcatcacacaaagcattgatt |
41784223 |
T |
|
| Q |
201 |
gaggaacaaattaaagccattgaattaaggaaaaaccattacatcagtgacatcaagcaacatgctctgtctccgaagcaaaatgaggccaaagaaaaag |
300 |
Q |
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| T |
41784224 |
gaggaacaaattaaagccattgaattaaggaaaaaacattacatcagtgacatcaagcaacatgctctgtctccgaagcaaaatgaggccaaagaaaaag |
41784323 |
T |
|
| Q |
301 |
agattcagaaggaaggtaatggtgggaactgtactcgtctaccaaggctttctccagtgcagaccggtggtggaggaatgatgcaggcggtttttcttgg |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41784324 |
agattcagaagcaaggtaatggtgggaactgtactcgtctaccaaggcttgcttcagtgcagaccggtggtggaggaatgatgcaggcggtttttcttgg |
41784423 |
T |
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| Q |
401 |
tgggtccggttcaagaagtgggaccggtgttttcttgcctcgtgctggaaccgttgttgctccatcagaatcaaccaaaaagaaaggtaacgtggattat |
500 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41784424 |
tgggtccggttcaagaaatgggaccggtgttttcttgcctcgtgctggaaccgttgttgctccatcagaatcaaccaaaaagaaaggtaacgtggattct |
41784523 |
T |
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| Q |
501 |
gtt |
503 |
Q |
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| T |
41784524 |
gtt |
41784526 |
T |
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