View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_18 (Length: 482)
Name: NF3762_low_18
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 101 - 464
Target Start/End: Complemental strand, 46965961 - 46965600
Alignment:
| Q |
101 |
ctctctttgtaa-ctatttgaattgattaaggcacaagtgcttggtaatcgtggaaatatttaatagatcaagaataagtagtagagaaaccagcttcga |
199 |
Q |
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| T |
46965961 |
ctctctttgtaaactatttgaattgattaaggcacaagtgcttggtaatcgtggaaatatttaatagatcaagaatgagtagtagagaaaccaactccga |
46965862 |
T |
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| Q |
200 |
tttcacaccatttttctaaatatattcatcatttacctaagccaagtaataacccgtgaaaaccctctaaaaatgtgtgtattgtatataccttgattca |
299 |
Q |
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| T |
46965861 |
tttcacaccatttttctaaatatattcaccatttacctaagccaagtaataacccgtgaaaaccctctaaaaatgtgtgtattg--tataccttgattca |
46965764 |
T |
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| Q |
300 |
catttaggatactttcaagttgtatcatcaagtggcatgtgcatgtcaaccggagggaatatcattattcaatgtttaaaaagtaggtttaggtagaaaa |
399 |
Q |
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| T |
46965763 |
catttaggatactttcaagttgtatcatcacgtggcatgtgcatgtcaaccggagagaatatcattattcaatgttt-aaaagtaggtttaggtagaaaa |
46965665 |
T |
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| Q |
400 |
agaccatgctataattttcatcaatatgatactttctatggaccgattgacttaaactacggagg |
464 |
Q |
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| T |
46965664 |
agaccatgctataattttcatcaatatgatactttctatggaccgattgacttaaactatggagg |
46965600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 250 - 400
Target Start/End: Original strand, 17837829 - 17837979
Alignment:
| Q |
250 |
aacccgtgaaaaccctctaaaaatgtgtgtattgtatataccttgattcacatttaggatactttcaagttgtatcatcaagtggcatgtgcatgtcaac |
349 |
Q |
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| T |
17837829 |
aacccatgaaagccctctaataatgtgtgtattgtatatactttgattcacatttaaaatactttcaaatattccgattaagtggcatgtgcatgtcgac |
17837928 |
T |
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| Q |
350 |
cggagggaatatcattattcaatgtttaaaaagtaggtttaggtagaaaaa |
400 |
Q |
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| T |
17837929 |
cagagagaattctattattcaatgtttaagaagtaagtttaagtagaaaaa |
17837979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 26613046 - 26612905
Alignment:
| Q |
262 |
ccctctaaaaatgtgtgtat--tgtatataccttgattcacatttaggatactttcaagttgtatcatcaagtggcatgtgcatgtcaaccggagggaat |
359 |
Q |
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| T |
26613046 |
ccctctaaaagtgtgtgtatattgtatgtactttgattcttgtttagaatgctctcaaattgtatggtcaagtggcatgtgcatgtcgacaagagagaat |
26612947 |
T |
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| Q |
360 |
atcattattcaatgtttaaaaagtaggtttaggtagaaaaaga |
402 |
Q |
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| T |
26612946 |
a-caagactcaatgtttaagaagtaggtttagttagaaaaaga |
26612905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 12568893 - 12568952
Alignment:
| Q |
316 |
aagttgtatcatcaagtggcatgtgcatgtcaaccggagggaatatcattattcaatgtt |
375 |
Q |
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| T |
12568893 |
aagttgtatggtcaagtggcatgtgcatgtcgaccgaagagaataccattattcaatgtt |
12568952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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