View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_21 (Length: 454)
Name: NF3762_low_21
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 264 - 454
Target Start/End: Complemental strand, 2569543 - 2569357
Alignment:
| Q |
264 |
cagtgcaaatattcattatgtctttttggagtttgttaagaaatatgcacaaatataaaagagtgaattcaaattagtacaataaattgtaaaagttaat |
363 |
Q |
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| T |
2569543 |
cagtgcaaatattcattatgtctttttggagtttgttaagaaa-atgcacaaatataaaagagtgaat---aattagtacaataaattgtaaaagttaat |
2569448 |
T |
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| Q |
364 |
tatagtgaccaactctcaaggagattttttattttaaagaaactctctaggagattcctttatgataacatcatgtaatataattggaaac |
454 |
Q |
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| T |
2569447 |
tatagtgaccaactctcaaggagattttttcttttaaagaaactctctaggagattcctttatgataacatcatgtaatataattggaaac |
2569357 |
T |
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Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 2569795 - 2569616
Alignment:
| Q |
12 |
acctgtgtgaattgaggtgtatgtgaattaagttcttgtgtgtaaatttatgaacaaaattgtcataacctcgtttataaacacatccacctataatacg |
111 |
Q |
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| T |
2569795 |
acctgtgtgaattgaggtgtatgtgaattaagttcttgtgtgtaaatttatgaacaaaattgtcataacctcgtttataaacatatccacctataatacg |
2569696 |
T |
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| Q |
112 |
tcggaaaaaattatagcacaaaatgtgcaacaacnnnnnnntggaacgctaaaaatgggtatgcagaatgggttcgaattt |
192 |
Q |
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| T |
2569695 |
tcgga-aaaattatagcacaaaatgtgcaacaacaaagaaatggaacgctaaaaatgggtatgcagaatgggttcgaattt |
2569616 |
T |
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