View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_24 (Length: 441)
Name: NF3762_low_24
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 38 - 425
Target Start/End: Complemental strand, 34461142 - 34460737
Alignment:
| Q |
38 |
aaaccaaaccactgtgcttcgtatttcagcaatctcacaaattatcccaagtcctaacctttgctttcactcaaatactatttgatcaatataccgaata |
137 |
Q |
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| T |
34461142 |
aaaccaaaccactgtgcttcgtatttcagcaatctcacaaattatcctaagtcctaacctttgctttcactcaaatactatttgatcaatataccgaaaa |
34461043 |
T |
|
| Q |
138 |
aaatgacgaatctccaaatacgaacagaggaaccaaacaacacagaaact------caaacccctcttctaacttcaaacacgaatcacgaacacgaaca |
231 |
Q |
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| T |
34461042 |
aaatgacgaatctccaaatacgaacagaggaaccaaacaacacagaaactgaaactcaaacccctcttctaacttcaaacacgaatcacgaacacgaaca |
34460943 |
T |
|
| Q |
232 |
cgaacacgaa------------gaaactaataacaaaaccgaagtagataaaagccttgcacgtttggaattgtttctaaacatcttagggttcaatcca |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34460942 |
cgaacacgaacacgaacacgaagaaactaataacaaaaccgaagtagataaaagccttgcacgtttggaattgtttctaaacatcttagggttcaatcca |
34460843 |
T |
|
| Q |
320 |
cgttcaattctatcctctataatttgctggtccggtttcttcacgcttggagtggcggttccactggtggcgctatggatgggcgactgttcagagtgcg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34460842 |
cgttcaattctatcctctataatttgctggtccggtttcttcacgcttggagtggcggttccactggtggcgctatggatgggcgactgttcagagtgcg |
34460743 |
T |
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| Q |
420 |
aaaagt |
425 |
Q |
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|||||| |
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| T |
34460742 |
aaaagt |
34460737 |
T |
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