View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_low_25 (Length: 436)

Name: NF3762_low_25
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_low_25
NF3762_low_25
[»] chr1 (1 HSPs)
chr1 (1-417)||(2568655-2569062)
[»] chr6 (2 HSPs)
chr6 (75-108)||(7465582-7465615)
chr6 (78-108)||(2424394-2424424)
[»] scaffold1444 (1 HSPs)
scaffold1444 (72-108)||(881-917)
[»] chr8 (2 HSPs)
chr8 (72-107)||(12954835-12954870)
chr8 (69-108)||(24733277-24733316)
[»] chr5 (1 HSPs)
chr5 (70-109)||(24231710-24231749)
[»] chr4 (3 HSPs)
chr4 (67-102)||(40252766-40252801)
chr4 (75-108)||(32692920-32692953)
chr4 (73-105)||(24369515-24369547)
[»] chr3 (3 HSPs)
chr3 (78-108)||(48180273-48180303)
chr3 (75-108)||(30082964-30082997)
chr3 (63-108)||(48322163-48322207)
[»] chr2 (3 HSPs)
chr2 (62-108)||(35022712-35022757)
chr2 (75-108)||(13811144-13811177)
chr2 (73-102)||(42924384-42924413)
[»] chr7 (1 HSPs)
chr7 (75-108)||(35923474-35923507)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 2569062 - 2568655
Alignment:
Q  1 ttggtaccttaatggtacacaagtgggcttaataatcatctacaacatgctcaaaaatgttattaaaataaggaaaatgttaacgagtgtctccgggaca 100  Q
    ||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  2569062 ttggtaccttaatggtacacaagtgggctcaataatc---tacaacatgctcaaaaatgttattaaaataagggaaatgttaacgagtgcctccgggaca 2568966  T
Q  101 ctctttaaccacgcttatgttgcaaaaactactccaagatctgtggttgcctcccttcccaagtcgataggctttccggtcacaacaacagataaatgtc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  2568965 ctctttaaccacacttatgttgcaaaaactactccaagatctgtggttgcctcccttcccatgtcgataggcattccggtcacaacaacagataaatgtc 2568866  T
Q  201 tgtaaaatttatctttcgagatcgtacattcaactttgatttcattaggttatatgttaggattaggattaaaactcttatacgtatcaaaaactataat 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||     
T  2568865 tgtaaaatttatctttcgagattgtacattcaactttgatttcattaggttatatgttagg------attaaaactcttatacatatcaaaaactataac 2568772  T
Q  301 gatagtttatataactttcttaattagttatagaacacaagaactaactctctgattcaatgatagaggaattcatatatttccttaatctgtttgtcac 400  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2568771 gatagtttttataactttcttaattagttatagaacacaagaattaactctgtgattcaatgatagagaaattcatatatttccttaatctgtttgtcac 2568672  T
Q  401 ttaccgtgtattttacc 417  Q
    ||||||  |||||||||    
T  2568671 ttaccgcatattttacc 2568655  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 7465615 - 7465582
Alignment:
Q  75 aaatgttaacgagtgtctccgggacactctttaa 108  Q
    ||||||||||||||||||||||||||||||||||    
T  7465615 aaatgttaacgagtgtctccgggacactctttaa 7465582  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 108
Target Start/End: Complemental strand, 2424424 - 2424394
Alignment:
Q  78 tgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||||||||||||||||||||||||    
T  2424424 tgttaacgagtgtctccgggacactctttaa 2424394  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 881 - 917
Alignment:
Q  72 ggaaaatgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||||||||||||||||||| ||||||||||    
T  881 ggaaaatgttaacgagtgtctccggggcactctttaa 917  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 12954870 - 12954835
Alignment:
Q  72 ggaaaatgttaacgagtgtctccgggacactcttta 107  Q
    |||||||||||||||||||||||| |||||||||||    
T  12954870 ggaaaatgttaacgagtgtctccgagacactcttta 12954835  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 24733316 - 24733277
Alignment:
Q  69 taaggaaaatgttaacgagtgtctccgggacactctttaa 108  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  24733316 taagggaaatgttaacgagtgtctccggggcactctttaa 24733277  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 24231710 - 24231749
Alignment:
Q  70 aaggaaaatgttaacgagtgtctccgggacactctttaac 109  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  24231710 aaggaaaatgttaacgagtgcctccggaacactctttaac 24231749  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 40252801 - 40252766
Alignment:
Q  67 aataaggaaaatgttaacgagtgtctccgggacact 102  Q
    ||||||||||||||||||||||||||||||| ||||    
T  40252801 aataaggaaaatgttaacgagtgtctccggggcact 40252766  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 32692920 - 32692953
Alignment:
Q  75 aaatgttaacgagtgtctccgggacactctttaa 108  Q
    ||||||||||||||| ||||||||||||||||||    
T  32692920 aaatgttaacgagtgcctccgggacactctttaa 32692953  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 24369547 - 24369515
Alignment:
Q  73 gaaaatgttaacgagtgtctccgggacactctt 105  Q
    |||||||||||||||||||||||||||| ||||    
T  24369547 gaaaatgttaacgagtgtctccgggacaatctt 24369515  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 108
Target Start/End: Complemental strand, 48180303 - 48180273
Alignment:
Q  78 tgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||||||||||||||||||||||||    
T  48180303 tgttaacgagtgtctccgggacactctttaa 48180273  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 30082997 - 30082964
Alignment:
Q  75 aaatgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||||||||||| |||||||||||||||    
T  30082997 aaatgttaacgagtgtcttcgggacactctttaa 30082964  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 48322163 - 48322207
Alignment:
Q  63 ttaaaataaggaaaatgttaacgagtgtctccgggacactctttaa 108  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  48322163 ttaaactaaggaaaatgttaacgagtg-ctccggggcactctttaa 48322207  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 35022757 - 35022712
Alignment:
Q  62 attaaaataaggaaaatgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||||||||||||||||||||||| || || ||||||||||    
T  35022757 attaaaataaggaaaatgttaacgagtgtc-ccagggcactctttaa 35022712  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 13811177 - 13811144
Alignment:
Q  75 aaatgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||| |||||||||||||||||||||||    
T  13811177 aaatgttaaccagtgtctccgggacactctttaa 13811144  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 42924384 - 42924413
Alignment:
Q  73 gaaaatgttaacgagtgtctccgggacact 102  Q
    ||||||||||||||||||||||||||||||    
T  42924384 gaaaatgttaacgagtgtctccgggacact 42924413  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 35923474 - 35923507
Alignment:
Q  75 aaatgttaacgagtgtctccgggacactctttaa 108  Q
    |||||||||||||||||||||| |||||||||||    
T  35923474 aaatgttaacgagtgtctccggaacactctttaa 35923507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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