View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3762_low_26 (Length: 430)
Name: NF3762_low_26
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 26196110 - 26196528
Alignment:
| Q |
1 |
aagtcatcccatgtttggactatccctaaaatccaagatagtgggatgttccaaaatcaagatcgaaatggctcaagaaagatgatgctaacacacaaaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26196110 |
aagtcatcccatgtttggactctccctaaaatccaagatagtgggatgttccaaaatcaagatcgaaatggctcaaaaaagatgatgctaacacacaaaa |
26196209 |
T |
|
| Q |
101 |
atccatgcttgtgttaattgtagaaagagagcaaatgcaactgtgggacttaaaagacttaaaaagggggagaagtggttggagggtttggtagaggtgc |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
26196210 |
atccatgcttgtgttaatagtagaaagagagcaaatgcaactgtgggacttaaaaaa---------ggggagaagtggttggagggtttggtagaggtgc |
26196300 |
T |
|
| Q |
201 |
agaaggagatatttagctattttgcaaatcactttgaaaatgttggttggaagagg----------------tggagtttctgattctctcttttgctta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26196301 |
agaaggagatatttagctattttgcaaatcactttgaaaatgttggttggaagaggcctcatctatacggggtggagtttctgattctctcttttgctta |
26196400 |
T |
|
| Q |
285 |
aatttccattctttctaggcctttcacggaggaggaaattaaagatttgattttcttagcagatggtaacaaaatcgggatctgaatgggtttaactttg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26196401 |
aatttccattctttctaggcctttcacggaggaggaaattaaagatttgattttcttagcagatggtaacaaaatcggggtctgaatgggtttaactttg |
26196500 |
T |
|
| Q |
385 |
cttttctcaaatctttttggggtgtcat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26196501 |
cttttctcaaatctttttggggtgtcat |
26196528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University