View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_28 (Length: 428)
Name: NF3762_low_28
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 63 - 412
Target Start/End: Original strand, 7760214 - 7760563
Alignment:
| Q |
63 |
agtcacaaatatttatgcacactatttgagtgcatacacatacttaagaaaggtggaagtaaacaacccattataccgttcctatcaaagtgacaaccca |
162 |
Q |
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| T |
7760214 |
agtcacaaatatttatgcacactatttgagtgcatacacatacttaagaaaggtggaaatagacaacccattataccgttcctatcaaagtgacaaccta |
7760313 |
T |
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| Q |
163 |
aaacccgaccaaaccatttagaaaatcgatcaatattgaaccattgttaaccacccacgggttggatcggataataataaacacttcacctttgnnnnnn |
262 |
Q |
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| T |
7760314 |
aaacccgaccaaactatttagaaaattgatcaatattgaaccattgttaaccacccgcgggttggatcggataat-ataagcacttcacctttg-aaaaa |
7760411 |
T |
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| Q |
263 |
ncaaaacctgcctttggatgtctttcatcaattacagaaaattcataaattgtgttaagaatgttgtcaaatttatttacac--ataaatcttctaaaaa |
360 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
7760412 |
acaaaacctgcctttggaggtctttcatcaattacagaaaattcataaattatgttaagaatgttggcaaatttatttacacatataaatcttctaaaaa |
7760511 |
T |
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| Q |
361 |
tagatccactagaataacttggcagaatatatctcaacttttaataacttgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760512 |
tagatccactagaataacttggcagaatatatctcaacttttaataacttgg |
7760563 |
T |
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