View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_29 (Length: 423)
Name: NF3762_low_29
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 1245268 - 1245681
Alignment:
| Q |
1 |
tagaagaagcagaagcggcaaaagaagcagaagaccgaattcatgatcagatcagagacagatctgaaaggaataatactgctcacgcttcaacgactga |
100 |
Q |
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|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
1245268 |
tagaagaagcagaagcggcaaaagcagcagaggaccgtattcatgatcagatcagagacttatccgaaaggaataatactgctcacgcttcaacgactga |
1245367 |
T |
|
| Q |
101 |
acccagtgcgagaattactatctcgagggaggaatatgagtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcg |
200 |
Q |
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| || |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245368 |
atccggtgctagaattactatctcgagggaggaatatgagtccttaaactgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcg |
1245467 |
T |
|
| Q |
201 |
acagcacatattgaagctgcaaagttcagtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaagcaacgcatg |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245468 |
acagcacatattgaagctgcaaagctcagtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaagcaacgcatg |
1245567 |
T |
|
| Q |
301 |
aggccttgaaaaaggccgagatggctgaaaaagcaaggaaaatggtggacagtgagcttagaaggtggcgcgagagagatcataagaaagcagcagaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245568 |
aggccttgaaaaaggccgagatggctgaaaaagcaaggaaaatggtggacagtgagcttagaaggtggcgcgagagagatcataagaaagcagcagaaac |
1245667 |
T |
|
| Q |
401 |
tgtggctcgagtat |
414 |
Q |
| |
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|||||||||||||| |
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| T |
1245668 |
tgtggctcgagtat |
1245681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 23788166 - 23788243
Alignment:
| Q |
248 |
aaagttagaggcaactcagatggaaattgaggatataaagaaagcaacgcatgaggccttgaaaaaggccgagatggc |
325 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||| ||||| || | ||||| || |||||||||||||||||||||||||| |
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| T |
23788166 |
aaagttggaggcaactcagaaggagattgaagatatgaaaactgcaacacaggaggccttgaaaaaggccgagatggc |
23788243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 42009930 - 42010343
Alignment:
| Q |
1 |
tagaagaagcagaagcggcaaaagaagcagaagaccgaattcatgatcagatcagagacagatctgaaaggaataatactgctcacgcttcaacgactga |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42009930 |
tagaagaagcagaagtggcaaaagcagcagaggaccgtattcttgatcagatcagagacttatctgaaaggaataatactgctcacgcttcaacgactga |
42010029 |
T |
|
| Q |
101 |
acccagtgcgagaattactatctcgagggaggaatatgagtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcg |
200 |
Q |
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| || |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010030 |
atccggtgctagaattaccatctcgagggaggaatatgagtccttaaaccgcagagctgaggagtgtgataaactagcgagtgcaaaagtggcggctgcg |
42010129 |
T |
|
| Q |
201 |
acagcacatattgaagctgcaaagttcagtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaagcaacgcatg |
300 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42010130 |
acagcacatattgaagctgcaaagctcagtgaaaatgaggctctcataaagttagaggcaactcagatggaaattgaggatataaagaaagcaacgcatg |
42010229 |
T |
|
| Q |
301 |
aggccttgaaaaaggccgagatggctgaaaaagcaaggaaaatggtggacagtgagcttagaaggtggcgcgagagagatcataagaaagcagcagaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010230 |
aggccttgaaaaaggccgagatggctgaaaaagcaaggaaaatggtggacagtgagcttagaaggtggcgcgagagagatcataagaaagcagcagaaac |
42010329 |
T |
|
| Q |
401 |
tgtggctcgagtat |
414 |
Q |
| |
|
|||||||||||||| |
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|
| T |
42010330 |
tgtggctcgagtat |
42010343 |
T |
|
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