View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_34 (Length: 359)
Name: NF3762_low_34
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_34 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 156 - 359
Target Start/End: Complemental strand, 18052796 - 18052595
Alignment:
| Q |
156 |
gagtcaggatctgttgacagcaggtgtgtgtgagagtgttttttaagtcaccagatggatcaaaatcatgtcttgttacctgcgtccttaagcatttgaa |
255 |
Q |
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||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18052796 |
gagtcaggatccgttgagagcaggtgtgtgtgag--tgttttttaagtcaccagatggatcaaaatcatgtcttgttacctgcgtccttaagcatttgaa |
18052699 |
T |
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| Q |
256 |
gaaggttcagttctttcttgagtttgagagctgtttgaaagtagtcatgttgaggaagcttagattctgaacatgtgccatgtttcatccattcatgtga |
355 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18052698 |
gaaggttcagttttttcttgagtttgagagctgtttgaaagtagtcatgttgagaaagcttagattctgaacatgtgccatgtttcatccattcatgtga |
18052599 |
T |
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| Q |
356 |
ccat |
359 |
Q |
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|||| |
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| T |
18052598 |
ccat |
18052595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 224 - 358
Target Start/End: Complemental strand, 18035050 - 18034916
Alignment:
| Q |
224 |
tgtcttgttacctgcgtccttaagcatttgaagaaggttcagttctttcttgagtttgagagctgtttgaaagtagtcatgttgaggaagcttagattct |
323 |
Q |
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||||||||||||||| | |||||| || || ||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18035050 |
tgtcttgttacctgcattcttaaggatctggagaagattcgattttttcttgagtttgagagctgtttgaaagtagtcatgttgagtaagcttagattct |
18034951 |
T |
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| Q |
324 |
gaacatgtgccatgtttcatccattcatgtgacca |
358 |
Q |
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| T |
18034950 |
gaacaggtaccatgtttcatccattcatgtgacca |
18034916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 228 - 359
Target Start/End: Complemental strand, 18047743 - 18047612
Alignment:
| Q |
228 |
ttgttacctgcgtccttaagcatttgaagaaggttcagttctttcttgagtttgagagctgtttgaaagtagtcatgttgaggaagcttagattctgaac |
327 |
Q |
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||||||||||||| || ||| ||||||| | ||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
18047743 |
ttgttacctgcgttctcaaggatttgaatgatgttcaattttttcttgagtttgagagccgtttgaaagtagtcatgttgagtaagcttagattctgaac |
18047644 |
T |
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| Q |
328 |
atgtgccatgtttcatccattcatgtgaccat |
359 |
Q |
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| T |
18047643 |
aggtaccatgtttcatccattcatgtgaccat |
18047612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 358
Target Start/End: Complemental strand, 18029262 - 18029119
Alignment:
| Q |
215 |
tcaaaatcatgtcttgttacctgcgtccttaagcatttgaagaaggttcagttctttcttgagtttgagagctgtttgaaagtagtcatgttgaggaagc |
314 |
Q |
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|||||||||||||||||||||||| | | | || | ||||| ||||| || | ||| ||||| ||||| |||| |||||| ||||||||| |||| |
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| T |
18029262 |
tcaaaatcatgtcttgttacctgcattcgtgaggctctgaaggaggtttgctttctccttaagtttaagagcagtttcaaagtactcatgttgatcaagc |
18029163 |
T |
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| Q |
315 |
ttagattctgaacatgtgccatgtttcatccattcatgtgacca |
358 |
Q |
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| T |
18029162 |
tcagattctgcacatgtaccatgtttctcccattcatgtgacca |
18029119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 3417182 - 3417282
Alignment:
| Q |
10 |
aagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactcacaatta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417182 |
aagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactcacaatta |
3417281 |
T |
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| Q |
110 |
c |
110 |
Q |
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| T |
3417282 |
c |
3417282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 18829576 - 18829668
Alignment:
| Q |
10 |
aagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctacatacaaaagccattactc |
102 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
18829576 |
aagaaaatgaaagaaaaataatcaaatgataacatgtgaacatccaaggctaaataatataaatagacttgctatatacaaaagccattactc |
18829668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 44472423 - 44472350
Alignment:
| Q |
10 |
aagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta |
83 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |
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| T |
44472423 |
aagaaaatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgcta |
44472350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 22022522 - 22022449
Alignment:
| Q |
10 |
aagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta |
83 |
Q |
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||||||||||||| |||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
22022522 |
aagaaaatgaaaggaaaataatcaaatgctaacctgtgaagatccaaggctaaataatataaaaagacttgcta |
22022449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 6507976 - 6508049
Alignment:
| Q |
10 |
aagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
6507976 |
aagaaaatgaaagaaaaataatcaaatgataacctgtgaacatccaaggctaaataatataaaaagacttgcta |
6508049 |
T |
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