View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_37 (Length: 333)
Name: NF3762_low_37
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 1245048 - 1245352
Alignment:
| Q |
11 |
cagagatgtgagtcagagcttgatgtctacttagcagaagaatctaaagttaggggtgcatctgagcaaatgatcttgacattgaaccagttgtccgatg |
110 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245048 |
cagagatgtgagtcagagcttgatgtctacttggcagaagaatctaaagttaggggtgcatctgagcaaatgatcttgacattgaaccagttgtccgatg |
1245147 |
T |
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| Q |
111 |
aaactgaaaatgcagagcgagaagcagaagatatgaagatcaatgcaatcgaattgaaggtggaagctgaagtcaccaaacatgcattaaaagatgcaga |
210 |
Q |
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| T |
1245148 |
aaactgaaaatgcagagcgagaagcagaagatatgaagatcaatgcaatcgaattgaaggtggaagctgaagtcaccaaacatgcattaaaagatgcaga |
1245247 |
T |
|
| Q |
211 |
aatgaagcttaaactagcattagaagaagcagaagcggcaaaagcagcagaggaccgtattcatgatcagatcagagacttatctgaaaggaataatact |
310 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1245248 |
aatgaagctcaaactagcattagaagaagcagaagcggcaaaagcagcagaggaccgtattcatgatcagatcagagacttatccgaaaggaataatact |
1245347 |
T |
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| Q |
311 |
gctca |
315 |
Q |
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||||| |
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| T |
1245348 |
gctca |
1245352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 23787735 - 23787775
Alignment:
| Q |
50 |
gaatctaaagttaggggtgcatctgagcaaatgatcttgac |
90 |
Q |
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| T |
23787735 |
gaatctaaggttagaggtgcatctgaggaaatgatcttgac |
23787775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 42009710 - 42010014
Alignment:
| Q |
11 |
cagagatgtgagtcagagcttgatgtctacttagcagaagaatctaaagttaggggtgcatctgagcaaatgatcttgacattgaaccagttgtccgatg |
110 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009710 |
cagagatgtgagtcagagcttgatgtccacttggcagaagaatctaaagttaggggtgcatctgagcaaatgatcttgacattgaaccagttgtccgatg |
42009809 |
T |
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| Q |
111 |
aaactgaaaatgcagagcgagaagcagaagatatgaagatcaatgcaatcgaattgaaggtggaagctgaagtcaccaaacatgcattaaaagatgcaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42009810 |
aaactgaaaatgcagagcgagaagcagaagatatgaagatcaatgcaatcgaattgaaggtggaagctgaagtcacaaaacatgcattaaaagatgcaga |
42009909 |
T |
|
| Q |
211 |
aatgaagcttaaactagcattagaagaagcagaagcggcaaaagcagcagaggaccgtattcatgatcagatcagagacttatctgaaaggaataatact |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42009910 |
aatgaagcttaaactagcattagaagaagcagaagtggcaaaagcagcagaggaccgtattcttgatcagatcagagacttatctgaaaggaataatact |
42010009 |
T |
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| Q |
311 |
gctca |
315 |
Q |
| |
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||||| |
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|
| T |
42010010 |
gctca |
42010014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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