View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_46 (Length: 256)
Name: NF3762_low_46
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37446617 - 37446853
Alignment:
| Q |
1 |
aaagtcgttgaaaagagaataatagaaaaatgtaaaatggaaattatatttgtaggtatataaggtttatagtaatttccattttacatttcattgtcaa |
100 |
Q |
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| T |
37446617 |
aaagtcgttgaaaagagaataatagaaaaatgtaaaatggaaattatatttgtaggtatataaggtttatagtaatttccattttacatttcattgtcaa |
37446716 |
T |
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| Q |
101 |
gagttaagaagtgaagtgataagtaggtcaagagtttgatcctcactttcaacataaaaattaacaatactaatgcgcacnnnnnnnnnnnngctaggta |
200 |
Q |
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| T |
37446717 |
gagttaagaagtgaagtgataaggaggtcaagagcttgatcctcactttcaacataaaaattaacaatactaatgcgcac--tatatatatagctaggta |
37446814 |
T |
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| Q |
201 |
atctttggttaactgtgaaatgtgctaaacctaaccaca |
239 |
Q |
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| T |
37446815 |
atctttggttaactgtgaaatttgctaaacctaaccaca |
37446853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 2487215 - 2487143
Alignment:
| Q |
100 |
agagttaagaagtgaagtgataagtaggtcaagagtttgatcctcactttcaacataaaaattaacaatacta |
172 |
Q |
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| T |
2487215 |
agagttaaggagtggagtgataaggaggtcaattgttcgatccccaccctcagcataaaaactaacaatacta |
2487143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 10033522 - 10033463
Alignment:
| Q |
100 |
agagttaagaagtgaagtgataagtaggtcaagagtttgatcctcactttcaacataaaaa |
160 |
Q |
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| T |
10033522 |
agagttaaggagtggagtgataaggaggtcaagag-ttgatccccaccctcaacataaaaa |
10033463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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