View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_low_48 (Length: 253)

Name: NF3762_low_48
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_low_48
NF3762_low_48
[»] chr1 (4 HSPs)
chr1 (13-240)||(2569140-2569379)
chr1 (173-240)||(46435465-46435532)
chr1 (196-240)||(8462232-8462276)
chr1 (173-240)||(29119324-29119391)
[»] chr5 (6 HSPs)
chr5 (173-240)||(11607534-11607601)
chr5 (173-240)||(33858538-33858605)
chr5 (173-240)||(19357262-19357329)
chr5 (173-240)||(33271718-33271785)
chr5 (177-222)||(1826381-1826426)
chr5 (196-240)||(25482742-25482786)
[»] chr3 (5 HSPs)
chr3 (177-240)||(44380358-44380421)
chr3 (173-240)||(37742829-37742896)
chr3 (170-240)||(33509784-33509854)
chr3 (175-240)||(35094652-35094717)
chr3 (173-225)||(19619217-19619269)
[»] chr7 (6 HSPs)
chr7 (173-240)||(48072491-48072558)
chr7 (188-240)||(35341640-35341692)
chr7 (173-229)||(48250271-48250327)
chr7 (173-240)||(32694570-32694637)
chr7 (173-234)||(31306868-31306929)
chr7 (189-240)||(40856949-40857000)
[»] chr4 (8 HSPs)
chr4 (177-240)||(51812018-51812081)
chr4 (177-240)||(35869575-35869638)
chr4 (173-240)||(12473808-12473875)
chr4 (173-240)||(12528217-12528284)
chr4 (173-240)||(55590575-55590642)
chr4 (177-240)||(1796654-1796717)
chr4 (181-240)||(22343441-22343500)
chr4 (177-232)||(35781021-35781076)
[»] chr2 (7 HSPs)
chr2 (173-234)||(21606149-21606210)
chr2 (173-234)||(37357917-37357978)
chr2 (177-240)||(4779689-4779752)
chr2 (173-240)||(23863803-23863870)
chr2 (173-240)||(34392081-34392148)
chr2 (173-240)||(25275622-25275689)
chr2 (180-240)||(4775739-4775799)
[»] chr6 (4 HSPs)
chr6 (173-225)||(5403876-5403928)
chr6 (177-240)||(1211848-1211911)
chr6 (173-217)||(10503259-10503303)
chr6 (173-240)||(32644838-32644904)
[»] chr8 (3 HSPs)
chr8 (173-240)||(24337830-24337897)
chr8 (173-240)||(11254028-11254095)
chr8 (177-222)||(41179567-41179612)
[»] scaffold0519 (1 HSPs)
scaffold0519 (173-240)||(11298-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (173-234)||(13005-13066)
[»] scaffold0032 (1 HSPs)
scaffold0032 (173-240)||(34297-34363)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 2569379 - 2569140
Alignment:
Q  13 catcatgtaatataattggaaacca--gtgtgatttttgttctcttatctaattattaattggtttctcttttgccttttttatataaataccaatatta 110  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||     
T  2569379 catcatgtaatataattggaaaccatagtgtgatttttgttctcttatctaattattaattggtttctcttttgccttttttctataaataccactattt 2569280  T
Q  111 nnnnnnnnatgagtcaagcaagagcatgcaaagac----------gttccaacatccaaagtacgctgacaaatagcacttgtgtaacataatgatatat 200  Q
            |||||| ||||||||||||||||||||          |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2569279 ttttttttatgagtgaagcaagagcatgcaaagacatcaaattaagttccaacatccaaagtacgctgacggatagcacttgtgtaacataatgatatat 2569180  T
Q  201 accattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    || |||| | |||||||||||| |||||||||||||||||    
T  2569179 actattgcctaattagaatgtgccacatggcacacccttt 2569140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 46435465 - 46435532
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||| ||||||||| ||||||| |||||||||||| |||||||||||||||||  || ||||||||||    
T  46435465 ataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacacccttt 46435532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 8462276 - 8462232
Alignment:
Q  196 tatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||    
T  8462276 tatataccattgtccaattaaaatgtgtcacgtggcacgcccttt 8462232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 29119324 - 29119391
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||||| ||||| | ||||||| |||| |||||||||||||| ||  |||||||||||||    
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacacccttt 29119391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 11607534 - 11607601
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  11607534 atagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacacccttt 11607601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 33858538 - 33858605
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  33858538 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacacccttt 33858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 19357262 - 19357329
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||| |||||    
T  19357262 atagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatccttt 19357329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 33271785 - 33271718
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    ||||||||| |||| ||||||| ||||||| |||| |||||||||||||| ||| |||| || |||||    
T  33271785 atagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatccttt 33271718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 1826426 - 1826381
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtg 222  Q
    |||||||||| |||||||||||||| |||||| |||||| ||||||    
T  1826426 cacttgtgtatcataatgatatatatcattgttcaattaaaatgtg 1826381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 25482742 - 25482786
Alignment:
Q  196 tatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||||    
T  25482742 tatataacattgcccaattaggatgtgccacatggcacacccttt 25482786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 44380421 - 44380358
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  44380421 cacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacacccttt 44380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 37742896 - 37742829
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||||| ||| |||||||| ||||    
T  37742896 atagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactcttt 37742829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 33509854 - 33509784
Alignment:
Q  170 caaatagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||||||  |||||| |||||| ||||||| |||||||||||| ||  ||||||| |||||    
T  33509854 caaatagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatccttt 33509784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 35094717 - 35094652
Alignment:
Q  175 agcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||| ||||||| ||||||| ||| || |||||||||||||||||||||||| || |||| |||||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatccttt 35094652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 19619269 - 19619217
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtca 225  Q
    ||||||| |||||| ||||||| |||||||||||| ||||||| |||||||||    
T  19619269 atagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 48072558 - 48072491
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||||    
T  48072558 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacacccttt 48072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 35341692 - 35341640
Alignment:
Q  188 cataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  35341692 cataatgatatatatcattgtccaattagaatgtgtcacgtggcacacccttt 35341640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 48250327 - 48250271
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatg 229  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  48250327 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatg 48250271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 32694570 - 32694637
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    ||||||||||||||  |||||| |||||||||||| | |||||||||||||||| |||||||||||||    
T  32694570 atagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacacccttt 32694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 31306868 - 31306929
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca 234  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||  |||||| ||||    
T  31306868 atagcatttgtgtaccataatgatatatatcattgtccaattagaatgtaccacatgacaca 31306929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  189 ataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| |||||| |||||||||||||||||||||||  |||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 51812081 - 51812018
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  51812081 cacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacacccttt 51812018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 35869575 - 35869638
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    ||||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacacccttt 35869638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 12473875 - 12473808
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||||||||  || ||||||||||    
T  12473875 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacacccttt 12473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 12528284 - 12528217
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||||||||  || ||||||||||    
T  12528284 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacacccttt 12528217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 55590642 - 55590575
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||| ||| ||||||| ||||| |||||| |||||||||||||||||| ||||||| |||||    
T  55590642 atagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatccttt 55590575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 1796717 - 1796654
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||| ||||||| |||||||||||||||||||| | |||| ||| || |||| |||||    
T  1796717 cacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 22343500 - 22343441
Alignment:
Q  181 tgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||||| |||||| |||||| ||||||||||||||||  ||||||| |||||    
T  22343500 tgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatccttt 22343441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 35781076 - 35781021
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggca 232  Q
    |||||| ||| ||||||| |||||||||||| |||||||||||||| ||| |||||    
T  35781076 cacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 21606210 - 21606149
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca 234  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  21606210 atagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 37357917 - 37357978
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca 234  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||||    
T  37357917 atagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcaca 37357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 4779752 - 4779689
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||| |||||    
T  4779752 cacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatccttt 4779689  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 23863803 - 23863870
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||  |||||||||||||    
T  23863803 atagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacacccttt 23863870  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 34392081 - 34392148
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  34392081 atagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacacccttt 34392148  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 25275622 - 25275689
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    ||||||||| |||| ||||||| |||||| ||||||||||||||||||| |||| ||||||| |||||    
T  25275622 atagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatccttt 25275689  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 4775799 - 4775739
Alignment:
Q  180 ttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    ||||||| ||||||| |||||||||||||||||||| | |||| ||  ||||||| |||||    
T  4775799 ttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatccttt 4775739  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 5403876 - 5403928
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtca 225  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5403876 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtca 5403928  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 1211848 - 1211911
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||| ||| |||||||||||||    
T  1211848 cacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacacccttt 1211911  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 10503259 - 10503303
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattaga 217  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  10503259 atagcacttgtgtaccataatggtatataccattgtccaattaga 10503303  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 32644838 - 32644904
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||| ||| |||  |||||||||||||    
T  32644838 atagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacacccttt 32644904  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 24337830 - 24337897
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||  |  |||||||||||||    
T  24337830 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacacccttt 24337897  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 11254028 - 11254095
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||    
T  11254028 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacacccttt 11254095  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 41179567 - 41179612
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtg 222  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||||    
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtg 41179612  T

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Target: scaffold0519 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 11365 - 11298
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||    
T  11365 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacacccttt 11298  T

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Target: scaffold0229 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 13005 - 13066
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca 234  Q
    |||||||||||||| ||||||| |||||||||||| || ||||||||||| ||| |||||||    
T  13005 atagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcaca 13066  T

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Target: scaffold0032 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 34363 - 34297
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||||| ||||| | |||||| |||| ||||||||||||||||||| || ||||||||||    
T  34363 atagcatttgtgtaccataagg-tatataacattatccaattagaatgtgtcacgtgacacacccttt 34297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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