View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_low_49 (Length: 251)

Name: NF3762_low_49
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_low_49
NF3762_low_49
[»] chr4 (15 HSPs)
chr4 (11-246)||(253325-253562)
chr4 (24-251)||(5572752-5572979)
chr4 (24-251)||(5584959-5585186)
chr4 (22-251)||(5856502-5856731)
chr4 (87-251)||(3747348-3747510)
chr4 (108-251)||(5896756-5896895)
chr4 (45-251)||(5551601-5551807)
chr4 (17-251)||(5557366-5557600)
chr4 (17-251)||(5563151-5563385)
chr4 (108-251)||(5849683-5849821)
chr4 (74-251)||(5611967-5612142)
chr4 (20-132)||(5603964-5604080)
chr4 (108-251)||(5887905-5888044)
chr4 (45-251)||(5854591-5854797)
chr4 (108-187)||(5890965-5891044)
[»] chr8 (1 HSPs)
chr8 (45-251)||(1481591-1481797)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 253325 - 253562
Alignment:
Q  11 cagagatgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctcaggcgaaatcccgtcttctatagggaacttgaaacaat--g 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  253325 cagagatgctaatggacttcaaagaactttatgctctcaacttttcaaacaatggtctcaggcgaaatcccgtcttctatagggaacttgaaacaattag 253424  T
Q  109 agtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253425 agtccttagacctctcaaataactctttagttagcaaaattcctgtgaaacttggaagcttgtcccttctttcttatttattagaacctctccttcaatc 253524  T
Q  209 atttggtgggggagattcccacaggtactcaacttcag 246  Q
    ||||||||||||||||||||||||||||||||||||||    
T  253525 atttggtgggggagattcccacaggtactcaacttcag 253562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 5572752 - 5572979
Alignment:
Q  24 gaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagac 119  Q
    ||||||||||| ||||||   ||||||| |||| |||||  |||||  |||  ||||||| ||||| |||||||||||||||||||  ||||||||||||    
T  5572752 gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac 5572851  T
Q  120 ctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggg 219  Q
    |||||||||||| ||||   | |  ||||||||||| | || | |||||||||| | ||||| |||||    |||||| |||||||||||||||||||||    
T  5572852 ctctcaaataacactttgactggtgaaattcctgtgcagctagaaagcttgtccttcctttcatattt----gaacctttccttcaatcatttggtgggg 5572947  T
Q  220 gagattcccacaggtactcaacttcagtcatt 251  Q
     |||| || |||||||||||||||||||||||    
T  5572948 aagatcccaacaggtactcaacttcagtcatt 5572979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 5584959 - 5585186
Alignment:
Q  24 gaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagac 119  Q
    ||||||||||| ||||||   ||||||| |||| |||||  |||||  |||  ||||||| ||||| |||||||||||||||||||  ||||||||||||    
T  5584959 gaacttcaaagcactttacattctcaacatttcaaacaaccgtctctcaggtaaaatcccatcttccatagggaacttgaaacaattggagtccttagac 5585058  T
Q  120 ctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggg 219  Q
    |||||||||||| ||||   | |  ||||||||||| | || | |||||||||| | ||||| |||||    |||||| |||||||||||||||||||||    
T  5585059 ctctcaaataacactttgactggtgaaattcctgtgcagctagaaagcttgtccttcctttcatattt----gaacctttccttcaatcatttggtgggg 5585154  T
Q  220 gagattcccacaggtactcaacttcagtcatt 251  Q
     |||| || |||||||||||||||||||||||    
T  5585155 aagatcccaacaggtactcaacttcagtcatt 5585186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 5856731 - 5856502
Alignment:
Q  22 atgaacttcaaagaactttatgctctcaacttttctaacaatgg--tctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttag 117  Q
    ||||||||||||| |||| ||| |||||||||||| |||||| |  ||||||| |||||||| |||||||| || ||||||||||| |  ||||| ||||    
T  5856731 atgaacttcaaagcacttcatgttctcaacttttcaaacaattgtctctcaggtgaaatcccatcttctattggaaacttgaaacagttggagtcattag 5856632  T
Q  118 acctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgg 217  Q
    |||||||||||||||||||  || |  |||||||  || | |||| |||  ||||  | |||||||| ||    ||||||||| ||||||||||| | ||    
T  5856631 acctctcaaataactctttgattggtgaaattcccatgcaacttgcaagtctgtcattcctttcttactt----gaacctctcattcaatcatttcgcgg 5856536  T
Q  218 gggagattcccacaggtactcaacttcagtcatt 251  Q
    || ||||||| ||||| |||||||||||||||||    
T  5856535 ggaagattccaacaggcactcaacttcagtcatt 5856502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 3747510 - 3747348
Alignment:
Q  87 ctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttctta 184  Q
    ||||||| ||||||||||| |  |||||||| ||||||||||||||||| || ||| |  |||||||  || | ||||  ||||||||| | ||||| ||    
T  3747510 ctataggaaacttgaaacagttagagtccttggacctctcaaataactcattggttggtgaaattcccatgcaacttgccagcttgtccttcctttcata 3747411  T
Q  185 tttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
    |||    |||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  3747410 ttt----gaacctctccttcaatcatttggttgggaagattccaacaggtacgcaacttcagtcatt 3747348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 5896756 - 5896895
Alignment:
Q  108 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaat 207  Q
    |||||||| |||||||||||||||||||| ||| |  ||||||| ||| | |||| ||| |||||  | |||||||||||    |||||| ||| |||||    
T  5896756 gagtccttggacctctcaaataactctttggttggtgaaattccggtgcaacttgcaagtttgtcattcctttcttattt----gaacctatccctcaat 5896851  T
Q  208 catttggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  5896852 catttggtggggaagattccaacaggtacccaacttcagtcatt 5896895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 5551807 - 5551601
Alignment:
Q  45 tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagtt 140  Q
    |||||||||||| |||||||||  ||| || |||||||| ||  |||| |||||| ||||||| |  ||||| |||||||||||||||||||| || |||    
T  5551807 tctcaacttttcgaacaatggtatctccggtgaaatcccatcaactattgggaacctgaaacagttagagtcattagacctctcaaataactccttggtt 5551708  T
Q  141 agcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaa 240  Q
     |   ||| |||||| | |||| |||||| ||  | |||||||||||    |||||| ||||||||||||||||| ||  |||| || ||||||||||||    
T  5551707 ggtgtaatacctgtgcaacttgcaagcttatcattcctttcttattt----gaacctttccttcaatcatttggttggaaagatccctacaggtactcaa 5551612  T
Q  241 cttcagtcatt 251  Q
    |||||||||||    
T  5551611 cttcagtcatt 5551601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 5557600 - 5557366
Alignment:
Q  17 tgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctca--ggcgaaatcccgtcttctatagggaacttgaaacaat--gagtc 112  Q
    |||||||| ||||||||| | |  ||| |||||||||||| ||||||| ||||   || |||||||| ||  |||| |||||| ||||||| |  |||||    
T  5557600 tgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatgctctctctggtgaaatcccatcaactattgggaacctgaaacagttggagtc 5557501  T
Q  113 cttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcattt 212  Q
    ||| ||||||||||||||||| || ||| |  ||||||| ||| | |||| |||| ||||  | |||||||||||    |||||||||||||||||||||    
T  5557500 cttggacctctcaaataactcattggttggtgaaattccagtgcaacttgcaagcatgtcattcctttcttattt----gaacctctccttcaatcattt 5557405  T
Q  213 ggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
     || |||  ||| || |||||||| ||||||||||||||    
T  5557404 agttgggatgatcccaacaggtacccaacttcagtcatt 5557366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 5563385 - 5563151
Alignment:
Q  17 tgctaatgaacttcaaagaactttatgctctcaacttttctaacaatggtctca--ggcgaaatcccgtcttctatagggaacttgaaacaat--gagtc 112  Q
    |||| ||| ||||||||| |||||||| |||||||||||| ||||||| ||||   || ||||| || ||  |||| |||||| ||||||| |  |||||    
T  5563385 tgctgatggacttcaaagcactttatgttctcaacttttcaaacaatgctctctctggtgaaattccatcaactatcgggaacctgaaacagttggagtc 5563286  T
Q  113 cttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcattt 212  Q
    ||| |||||||||||||||||| | ||| | || ||||||||| |  ||| |||| ||||  | |||||||  ||    |||||| ||| ||||||||||    
T  5563285 cttggacctctcaaataactctctggttggtaagattcctgtgcagattgcaagcctgtcattcctttctttctt----gaacctttccatcaatcattt 5563190  T
Q  213 ggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
    ||||||| |||| || |||||||| |||||||| |||||    
T  5563189 ggtggggaagatcccaacaggtacccaacttcaatcatt 5563151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 5849683 - 5849821
Alignment:
Q  108 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaat 207  Q
    |||||||| |||||||||||||||||||| ||| |  || |||||||| |  ||| || ||||| | | |||||||||||    |||||| |||||||||    
T  5849683 gagtccttggacctctcaaataactctttggttggtgaa-ttcctgtgcagtttgcaaacttgttcttcctttcttattt----gaacctatccttcaat 5849777  T
Q  208 catttggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
    |||||||||||| |||| || |||||||| ||||||||||||||    
T  5849778 catttggtggggaagatcccaacaggtacccaacttcagtcatt 5849821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 251
Target Start/End: Complemental strand, 5612142 - 5611967
Alignment:
Q  74 gaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgt 171  Q
    |||||||| ||  |||| |||||| ||||||| |  |||||||| ||| ||||||| ||||| || ||| |  |||||||| || | |||| |||| |||    
T  5612142 gaaatcccatcaactattgggaacctgaaacagttagagtccttggacttctcaaacaactccttggttggtgaaattcctctgcaacttgcaagcatgt 5612043  T
Q  172 cccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
    |  | |||||||||||    ||| || ||||||||||||||||| ||| |||| || |||||||||||||||||||||||    
T  5612042 cattcctttcttattt----gaaactttccttcaatcatttggttgggaagatcccaacaggtactcaacttcagtcatt 5611967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 5604080 - 5603964
Alignment:
Q  20 taatgaacttcaaagaactttatgctctcaacttttctaacaatggtctc--aggcgaaatcccgtcttctatagggaacttgaaacaat--gagtcctt 115  Q
    ||||| ||||||||| |||||||| |||||||||||| ||||||||||||   || |||||||| ||  || | |||||| ||||||| |  ||||| ||    
T  5604080 taatggacttcaaagcactttatgttctcaacttttcaaacaatggtctctatggtgaaatcccatcaactgttgggaacctgaaacagttggagtcttt 5603981  T
Q  116 agacctctcaaataact 132  Q
     ||||||||||||||||    
T  5603980 ggacctctcaaataact 5603964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 5887905 - 5888044
Alignment:
Q  108 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaat 207  Q
    |||||||| ||||||||||| ||||| || ||| |  |||||||| || | |||| |||| ||||  | |||| ||||||    |||||| || ||||||    
T  5887905 gagtccttggacctctcaaacaactccttggttggtgaaattcctctgcaacttgcaagcatgtcattcctttgttattt----gaacctttcgttcaat 5888000  T
Q  208 catttggtgggggagattcccacaggtactcaacttcagtcatt 251  Q
    |||||||| ||| |||| || |||||||| ||||||||||||||    
T  5888001 catttggttgggaagatcccaacaggtacccaacttcagtcatt 5888044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 251
Target Start/End: Original strand, 5854591 - 5854797
Alignment:
Q  45 tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagtt 140  Q
    |||||||||||| ||||||| |  ||| || |||||||| ||  |||| |||||| ||||||| |  ||||| |||||||||||||||||||| || |||    
T  5854591 tctcaacttttcaaacaatgctttctctggtgaaatcccatcaactatcgggaacctgaaacagttagagtcattagacctctcaaataactccttggtt 5854690  T
Q  141 agcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaa 240  Q
     |   ||| |||||| | || | ||||||||   | || ||||||||    |||||| ||||||||| ||||||| ||  |||| || ||||| ||||||    
T  5854691 ggtgtaatacctgtgcaactggcaagcttgttgttcctctcttattt----gaacctttccttcaattatttggttggaaagatcccgacaggaactcaa 5854786  T
Q  241 cttcagtcatt 251  Q
    |||||||||||    
T  5854787 cttcagtcatt 5854797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 5890965 - 5891044
Alignment:
Q  108 gagtccttagacctctcaaataactctttagttagcaaaattcctgtgaatcttggaagcttgtcccttctttcttattt 187  Q
    |||||||| |||||||||||||||||||| ||| |  ||||||||||| | |||| |||| ||||  | |||||||||||    
T  5890965 gagtccttggacctctcaaataactctttggttggtgaaattcctgtgcagcttgcaagcatgtcattcctttcttattt 5891044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 1481797 - 1481591
Alignment:
Q  45 tctcaacttttctaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaat--gagtccttagacctctcaaataactctttagtt 140  Q
    |||||||||||| ||||||| |  ||| || |||||||| ||  |||| |||||| ||||||| |  |||||||||||||||||||||||||||||  |     
T  1481797 tctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttagagtccttagacctctcaaataactctttgttc 1481698  T
Q  141 agcaaaattcctgtgaatcttggaagcttgtcccttctttcttatttattagaacctctccttcaatcatttggtgggggagattcccacaggtactcaa 240  Q
     | |||||||||||| |  ||| | || ||||  |||||||||||||    ||||||||| |||||||||||||| |||  |||||| ||||||||||||    
T  1481697 ggtaaaattcctgtgcagattgtatgcatgtcatttctttcttattt----gaacctctctttcaatcatttggtagggatgattccaacaggtactcaa 1481602  T
Q  241 cttcagtcatt 251  Q
    |||||||||||    
T  1481601 cttcagtcatt 1481591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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