View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_5 (Length: 727)
Name: NF3762_low_5
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 707
Target Start/End: Complemental strand, 36109973 - 36109280
Alignment:
| Q |
11 |
tcatcacaagagtccaatgatgcttatgatgatgtaaagtatatgctaaattgctaatgaatgccaccaaggtacataaaagaaaaacttgtaccagctg |
110 |
Q |
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| T |
36109973 |
tcatcacaagagtccaatgatgcttatgatgatgtaaagtatatgctaaattgctaatgaatgccaccaaggtagataaaagaaaaacttgtaccagctg |
36109874 |
T |
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| Q |
111 |
taagtaatcctttgaaattttacaagccaggcccttggattagttagcaaattgatataattatctccagaaagtatggaaggtgaggtcttaaattcta |
210 |
Q |
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| T |
36109873 |
taagtaatcctttgaaattttacaagccaggcccttggactagttaccagattgatataattatttccagaaagtatggaaggtgaggtcttaaattcta |
36109774 |
T |
|
| Q |
211 |
aactacaaaaaagggggagaatggtctatggtccatgcatgcaagccatggtctgccactaagattatgataatatggttctaaataaaagactgaaagc |
310 |
Q |
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| T |
36109773 |
aactacaaaaaagggggagaatggtctatggtccatgcatgcaagccatggtctgccactaagattatgaaaatatggttctaaataaaagactgaaagc |
36109674 |
T |
|
| Q |
311 |
gcgtcccaaaaccaagatatagcttattcctaaccattaacaaactatttgcttgtttcgatttcagaaagggatcactgtcattcatatttgctttgct |
410 |
Q |
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| T |
36109673 |
gcgtcccaaaaccaagatatagcttattcctaaccattaacaaactatttgcttgtttcgatttcagaaagggatcactgtcattcatatttgctttgct |
36109574 |
T |
|
| Q |
411 |
atttgcgattctgactcaacactcttgttttggggtgaatttaattagctttttggacattgtggtgacatttaattagctttttggttaatgaatgatc |
510 |
Q |
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| T |
36109573 |
atttgcgattctgactcaacactcttgttttggggtgaatttaattagctttttggacaatgtggtgacatttaattagctttttggtta----atgatc |
36109478 |
T |
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| Q |
511 |
atcgatcgtgtgataagaactcgatttgatagcatttgtgaatga-ttttttgtttcttttgattgtctaatgaaaaatcaacatgacaagatactaata |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36109477 |
atcgatcgtgtgataagaactcgatttgatagcatttgtgaatgatttttttgtttcttttgattgtctaatgaaaaatcaacatgacaagatactcata |
36109378 |
T |
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| Q |
610 |
attccttgccaaaaatttagctttacaatttttatagggtgtttggtactgtggcacttttagaaaaattgcggcaaagaggcgcgtttacgtggaag |
707 |
Q |
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| T |
36109377 |
attccttttcaaaaatttagctttacaatttttatagggtgtttggtactgtggcacttttagaaaaattgcggcaaagaggcgcgttaaagtggaag |
36109280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 641 - 707
Target Start/End: Complemental strand, 6762664 - 6762598
Alignment:
| Q |
641 |
ttatagggtgtttggtactgtggcacttttagaaaaattgcggcaaagaggcgcgtttacgtggaag |
707 |
Q |
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| T |
6762664 |
ttatagggtgtttggtactgcggcactttaagaaaaaatgcggcaaagaggcgcgttaacgtggaag |
6762598 |
T |
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