View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_50 (Length: 250)
Name: NF3762_low_50
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 37685687 - 37685569
Alignment:
| Q |
1 |
tattataatggcaacgtcatatacaattctagaataattgtgttcaagacattttatgttttcattgcgtgtttaaagaaaactcaaagacgcaaatcaa |
100 |
Q |
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| T |
37685687 |
tattataatggcaacgtcatatacaattctagaataattgtgttcaagacattt-atgttttcattgcgtgtgtaaagaaaactcaaagacgcaaatcaa |
37685589 |
T |
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| Q |
101 |
gcggcttccttatattgttt |
120 |
Q |
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| T |
37685588 |
gcggcttccttatattgttt |
37685569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 37685520 - 37685431
Alignment:
| Q |
118 |
tttcctgcataattctgtaggcttttgggagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgaggga |
207 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37685520 |
tttcctgcataattttgtaggcttttggtagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgaggga |
37685431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 7498074 - 7498192
Alignment:
| Q |
1 |
tattataatggcaacgtcatatacaattctagaataattgtgttcaagacattttatgttttcattgcgtgtttaaagaaaactcaaagacgcaaatcaa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
7498074 |
tattataatggcaacttcatatacaattctagaataattgtgttcaagacattt-atgttttcattgcgtgtgtaaagaaaactcatagacgcaaatcaa |
7498172 |
T |
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| Q |
101 |
gcggcttccttatattgttt |
120 |
Q |
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|||||||||||||||||||| |
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| T |
7498173 |
gcggcttccttatattgttt |
7498192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 7498245 - 7498333
Alignment:
| Q |
118 |
tttcctgcataattctgtaggcttttgggagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgaggg |
206 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7498245 |
tttcctgcagaattctgtaggcttttggtagtgctgtggtctttgtttattatttttctattattcactttctacctttaatgtgaggg |
7498333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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