View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_52 (Length: 243)
Name: NF3762_low_52
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 24295892 - 24296095
Alignment:
| Q |
18 |
gtttgaaccgggtttaatgaaccgtgtacgtgagagtaattcaatgagtacggccatgacgaaaacaaggatcaacgctaatacatacataccggtatca |
117 |
Q |
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| T |
24295892 |
gtttgaaccgggtttaatgaaccgtgtacgtgagagtaattcaatgagtacggccatgacgaaaacaaggatcaacgctaatacatacataccggtatca |
24295991 |
T |
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| Q |
118 |
ccattaggccaattgttgaagagaattaaagcatctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatgacccatcatcatggtgttat |
217 |
Q |
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| T |
24295992 |
ccgttaggccaattgttgaagagaattaaagcgtctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatgacccatcatcatggtgttat |
24296091 |
T |
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| Q |
218 |
tggt |
221 |
Q |
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|||| |
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| T |
24296092 |
tggt |
24296095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 24511165 - 24511365
Alignment:
| Q |
18 |
gtttgaaccgggtttaatgaaccgtgtacgtgagagtaattcaatgagtacggccatgacgaaaacaaggatcaacgctaatacatacataccggtatca |
117 |
Q |
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| T |
24511165 |
gtttgaaccgggtttaatgaaccgggtgcttgagagaaactcgatgagtatggacatggcgaaaacaaggatcaaggccaatacatacttaccagaatta |
24511264 |
T |
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| Q |
118 |
ccattaggccaattgttgaagagaattaaagcatctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatgacccatcatcatggtgttat |
217 |
Q |
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| T |
24511265 |
ccagcaggccagttatcaaagagaatcaatgcatctttaccccagaaaaatgtcatgtgcatcatgtcatgcatc---tgacccatcatcatagtgtcat |
24511361 |
T |
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| Q |
218 |
tggt |
221 |
Q |
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|||| |
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| T |
24511362 |
tggt |
24511365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 24508867 - 24508956
Alignment:
| Q |
123 |
aggccaattgttgaagagaattaaagcatctttgccccagaagaatgtcatgtgcatcataccgtgcatcttatgacccatcatcatggt |
212 |
Q |
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|||||||||||| |||||||| || | ||| || |||||||||||||||||||| ||||| || ||||||||| | | |||||||||||| |
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| T |
24508867 |
aggccaattgttaaagagaatcaacgaatccttaccccagaagaatgtcatgtgtatcatgccctgcatcttaaggctcatcatcatggt |
24508956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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