View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_57 (Length: 237)
Name: NF3762_low_57
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1521626 - 1521847
Alignment:
| Q |
1 |
atatagagttatagtttagtttgcattattttgtaatctcttataatataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtgtgtgt |
100 |
Q |
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| T |
1521626 |
atatagagttatagtttagtttgcattattttgtaatctcttataatataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtgtgtgt |
1521725 |
T |
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| Q |
101 |
gtcatttggccgcgcctttggttgacaagtgggtagcttcaattcatgcctcgtgtccagttgggttttaaccatttgcttccaaagagaaaaggttgtt |
200 |
Q |
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| T |
1521726 |
gtcatttggccgcgcctttggttgacaagtgggtagcttcaattcatgcctcgtgtccagttgggttttaaccatttgcttccaaagagaaaaggttgtt |
1521825 |
T |
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| Q |
201 |
tgtgtcgtgaagagggaaatct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1521826 |
tgtgtcgtgaagagggaaatct |
1521847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 22081211 - 22081049
Alignment:
| Q |
34 |
taatctcttataatataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtgtgtgtgt--catttggccgcgcctttggttgacaagtg |
131 |
Q |
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| T |
22081211 |
taatctcttataatataagaaaggagtgcacactcaagcacagcttgacttcttgcagcgtgtgtgtgtgacatttggcagtgcctttgcttgacaagtg |
22081112 |
T |
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| Q |
132 |
ggtagcttcaattcatgcctcgtgtccagttgggttttaaccatttgcttccaaagagaaaag |
194 |
Q |
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| T |
22081111 |
ggtagcttctttacatgacatgtgtgcagttgggttttcaaaacttgcttccaaagagaaaag |
22081049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 134
Target Start/End: Complemental strand, 32172738 - 32172637
Alignment:
| Q |
35 |
aatctcttataatataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtg--tgtgtgtcatttggccgcgcctttggttgacaagtgg |
132 |
Q |
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| T |
32172738 |
aatctcttataatataagaaaggagtgcacgctcaacaggagcttgacatctggcagcgtgtatgtgtgccatttggcagcggctttgcttgacaagtgg |
32172639 |
T |
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| Q |
133 |
gt |
134 |
Q |
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|| |
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| T |
32172638 |
gt |
32172637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 23701493 - 23701465
Alignment:
| Q |
42 |
tataatataagaaaggagtgcacactcaa |
70 |
Q |
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| T |
23701493 |
tataatataagaaaggagtgcacactcaa |
23701465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2913461 - 2913497
Alignment:
| Q |
1 |
atatagagttatagtttagtttgcattattttgtaat |
37 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |
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| T |
2913461 |
atatggagttatagtttagtttacattattttgtaat |
2913497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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