View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3762_low_60 (Length: 227)

Name: NF3762_low_60
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3762_low_60
NF3762_low_60
[»] chr3 (16 HSPs)
chr3 (1-227)||(6897564-6897790)
chr3 (1-215)||(6880004-6880218)
chr3 (2-186)||(6851386-6851570)
chr3 (1-227)||(6235523-6235749)
chr3 (1-222)||(6242803-6243019)
chr3 (1-148)||(6166451-6166599)
chr3 (3-221)||(6139770-6139986)
chr3 (3-111)||(6263274-6263382)
chr3 (3-205)||(6593682-6593882)
chr3 (3-184)||(6256721-6256902)
chr3 (4-221)||(13275734-13275951)
chr3 (1-127)||(6914677-6914803)
chr3 (3-66)||(6724408-6724471)
chr3 (171-217)||(6166384-6166430)
chr3 (1-38)||(6557045-6557082)
chr3 (1-38)||(7585536-7585573)
[»] scaffold0425 (1 HSPs)
scaffold0425 (1-186)||(13819-14002)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6897790 - 6897564
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6897790 gagagtgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 6897691  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    ||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  6897690 atctgtttatacttgtcaaacattagtatattttctcttacatagtaaaaattattcataagatactatcttttatgttgaacagtgcacggtgtttgtg 6897591  T
Q  201 atataagttacaatggtgtttcagacc 227  Q
    ||||| || ||||||||||||||||||    
T  6897590 atatatgtaacaatggtgtttcagacc 6897564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 6880218 - 6880004
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  |||    
T  6880218 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgataggcggctgagatgagatgttattgtagccaggtgcaccacatttccca 6880119  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  6880118 atctgtttatacttgtcaaacattagtatattttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtgcacggtgtttgtg 6880019  T
Q  201 atataagttacaatg 215  Q
    ||||| ||| |||||    
T  6880018 atatatgttgcaatg 6880004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 6851386 - 6851570
Alignment:
Q  2 agagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaa 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||     
T  6851386 agagcattggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattgtagccaggtgcaccacatttcccag 6851485  T
Q  102 tctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagt 186  Q
    |||||||||||||||||||||||||||   ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  6851486 tctgtttatacttgtcaaacattagtatattttctcttagatagtaaaaattattcattagatactatcttttatgttgaacagt 6851570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6235749 - 6235523
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||  |||    
T  6235749 gagagcgttggcatacaatttctcacattccttatgtgacaatttcctgattggcagctgagatgagatgttattgtagccaggtgcaccacatttccca 6235650  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||| || || |   |||| | |||||||||||||||| ||| ||  |||||    
T  6235649 atctgtttatacttgtcaaacattagtaaattttcttttaaatagtaaaaataatgcacagcctactgtgttttatgttgaacagtgcacggttgttgtg 6235550  T
Q  201 atataagttacaatggtgtttcagacc 227  Q
    ||||| ||| |||||| ||||| ||||    
T  6235549 atatatgtttcaatggcgtttctgacc 6235523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6243019 - 6242803
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    |||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||     ||||| |||||||||||| |||||||||||    
T  6243019 gagagcgttggcatacaatttgtcacatccctaacgtgacaatttcctgattggcggctgagatg-----ttattgtagccaggtgcagcacattcacca 6242925  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtg 200  Q
    ||||||||||| ||||||||||||||||   ||||| ||||| ||||||||| || || || ||||| | |||||||||||||||| ||| |||||||||    
T  6242924 atctgtttatagttgtcaaacattagtatattttcttttaaacagtaaaaataatgcacaacatactgtgttttatgttgaacagtgcactgtgtttgtg 6242825  T
Q  201 atataagttacaatggtgtttc 222  Q
    ||||| ||| ||||||||||||    
T  6242824 atatatgtttcaatggtgtttc 6242803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6166599 - 6166451
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  6166599 gagaacgtaggcatacaattagtcacattcctgatgtgacaatttcctgattggcagctgatatgagatgttattgtagccaggtgcaccacattcacca 6166500  T
Q  101 atctgttt-atacttgtcaaacattagtaatatttctcttaaatagtaa 148  Q
    |||||||| ||  |||||||||||||||||  ||||| |||||||||||    
T  6166499 atctgtttaattgttgtcaaacattagtaaattttcttttaaatagtaa 6166451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 6139986 - 6139770
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    ||||||||||||||||||  ||| || |||  ||| ||||||||||||||| ||||||||||||||||||||| |  |||||||||| ||||||||||||    
T  6139986 gagcgttggcatacaatttctcatatcccttctgtcacaatttcctgattgacggctgagatgagatgttattttttccaggtgcacaacattcaccaat 6139887  T
Q  103 ctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtgat 202  Q
    ||||||||| |||||||||||||||||  ||||| ||||||||||||| | || |  |   |||| | ||||||||||| |||| ||| |||||||||||    
T  6139886 ctgtttatagttgtcaaacattagtaaattttcttttaaatagtaaaattaatgc--agtgtactgtgttttatgttgatcagtgcacggtgtttgtgat 6139789  T
Q  203 ataagttacaatggtgttt 221  Q
    ||| ||| |||||||||||    
T  6139788 atatgtttcaatggtgttt 6139770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 6263382 - 6263274
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  6263382 gagcgttggcatacaatttctcacattccttatgtgacaatttcctgattggcagctgagatgagatgttattgtagccaggtgcacaacattcaccaat 6263283  T
Q  103 ctgtttata 111  Q
    |||||||||    
T  6263282 ctgtttata 6263274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 6593682 - 6593882
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||| |||| || |||||| ||||||| |||||||||||||| |||||||||||    
T  6593682 gagcattggcataaaattagtcacattcctgatgtaacaatttcctgattagcggttgggatgagctgttattgtagccaggtgcaccgcattcaccaat 6593781  T
Q  103 ctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtgat 202  Q
     ||||||||||||||||| ||| || | |||||| | ||||  | | ||| || || |||||||||| |||||| ||||||||| ||  |||||||||||    
T  6593782 ttgtttatacttgtcaaagatttgtga-atttctgtcaaatcat-acaataatgcacaagatactatgttttatcttgaacagtgcatggtgtttgtgat 6593879  T
Q  203 ata 205  Q
    |||    
T  6593880 ata 6593882  T

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Target: chr3; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 6256902 - 6256721
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaat 102  Q
    |||| |||||||||||||  |||||| ||| |||||| ||||||||||||||| |||||||| |||| ||||| ||| ||||||||| ||||||||||||    
T  6256902 gagcattggcatacaatttctcacatcccttatgtgataatttcctgattggcagctgagatcagattttattgtagacaggtgcacaacattcaccaat 6256803  T
Q  103 ctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaaca 184  Q
    ||||||||| |||||||||||||||||  || || |  ||||||||||||||| |||||  |||| | |||||| |||||||    
T  6256802 ctgtttatagttgtcaaacattagtaaatttcctttcgaatagtaaaaattatgcataacgtactgtgttttattttgaaca 6256721  T

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Target: chr3; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 13275734 - 13275951
Alignment:
Q  4 agcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcaccaatc 103  Q
    |||||||||||||||||  ||| || |||  ||| ||||||||||||||| ||||||||||||||||||||| |  |||||||||| | |||||||||||    
T  13275734 agcgttggcatacaatttctcatatcccttctgtcacaatttcctgattgacggctgagatgagatgttattttttccaggtgcacgatattcaccaatc 13275833  T
Q  104 tgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagtacacagtgtttgtgata 203  Q
    |||||||| ||||| |||||||||||  ||||| ||||||||| ||| | || || ||  |||| | ||||||||||| ||   ||  ||||||||||||    
T  13275834 tgtttatagttgtcgaacattagtaaattttcttttaaatagtgaaattaatgcacaacgtactgtgttttatgttgatcaagtcatggtgtttgtgata 13275933  T
Q  204 taagttacaatggtgttt 221  Q
    || ||| | |||||||||    
T  13275934 tatgtttctatggtgttt 13275951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 6914803 - 6914677
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    ||||||||||||||| |||| ||||||| |||   ||||||||||| ||||| | ||||||||| |||||||||| || ||||||||||||||||||  |    
T  6914803 gagagcgttggcatagaatttgtcacatcccttccgtgacaatttcttgatttgaggctgagatcagatgttattgtatccaggtgcaccacattcaata 6914704  T
Q  101 atctgtttatacttgtcaaacattagt 127  Q
    ||||||||||  | |||||||| ||||    
T  6914703 atctgtttattttagtcaaacaatagt 6914677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 6724408 - 6724471
Alignment:
Q  3 gagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatga 66  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  6724408 gagctttggcatacaattagtcacattcctgatgtaacaatttcctgattggcggctgggatga 6724471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 6166430 - 6166384
Alignment:
Q  171 ttttatgttgaacagtacacagtgtttgtgatataagttacaatggt 217  Q
    |||||||||||||||| ||| |||||||||||||| ||| |||||||    
T  6166430 ttttatgttgaacagtgcacggtgtttgtgatatatgtttcaatggt 6166384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6557045 - 6557082
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtg 38  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  6557045 gagagcgttggcatacaattagtcacatcccttatgtg 6557082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7585573 - 7585536
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtg 38  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7585573 gagagcgttggcatacaattagtcacatccctggtgtg 7585536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13819 - 14002
Alignment:
Q  1 gagagcgttggcatacaattagtcacattcctgatgtgacaatttcctgattggcggctgagatgagatgttattatagccaggtgcaccacattcacca 100  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||    
T  13819 gagagcattggcatacaattagtcac-ttcctgatgtgacaatttcctgattggcggctgagatgagatgttattgtagccaggtgcaccacatttccca 13917  T
Q  101 atctgtttatacttgtcaaacattagtaatatttctcttaaatagtaaaaattattcataagatactatcttttatgttgaacagt 186  Q
     |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  13918 gtctgtttatacttgtcaaacattagt-atatttctcttagatagtaaaaattattcattagatactatcttttatgttgaacagt 14002  T

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