View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3762_low_62 (Length: 203)
Name: NF3762_low_62
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 45043851 - 45044021
Alignment:
| Q |
15 |
aaaggaaaatttaccaatcgtgctttagatatgatcaagaagataaaagagtggttttaatcagggtaaagtattaactaaccttcatattgatatggaa |
114 |
Q |
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| T |
45043851 |
aaaggaaaatttaccaatcgtgcattagatatgatcaagaagataaaagagtggttttaatcagggtaaagtattaactaaccttcatattgatatggaa |
45043950 |
T |
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| Q |
115 |
gcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaatgaagaactagggg |
185 |
Q |
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| T |
45043951 |
gcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaatgaagaactagggg |
45044021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 46175992 - 46176098
Alignment:
| Q |
79 |
ggtaaagtattaactaaccttcatattgatatggaagcttataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaatgaagaa |
178 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46175992 |
ggtaaagtattaactaaccttcatattgttatggaagcttatgagctaaggtagaagaaactcttgatgcaaattgtaatagaagggaaagaatgaagaa |
46176091 |
T |
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| Q |
179 |
ctagggg |
185 |
Q |
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||||||| |
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| T |
46176092 |
ctagggg |
46176098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 45036457 - 45036607
Alignment:
| Q |
19 |
gaaaatttaccaatcgtgctttagatatgatcaagaagataaaagagtggttttaatcagggtaaagtattaactaaccttcatattgatatggaagctt |
118 |
Q |
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||||||| ||||||| | |||||| |||||| ||| |||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
45036457 |
gaaaattcaccaatcatactttagctatgatgaaggagataaaa-agtggttttaatgaaggtaaagtattaactaaccttcatattgttatggaagcta |
45036555 |
T |
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| Q |
119 |
ataagccaaggtagaagaaactcttgatgtaaattgtaatagaagggaaagaa |
171 |
Q |
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| T |
45036556 |
ctgagctgaggtagaag-aactcttgatgcaaattgtaatagaagggaaagaa |
45036607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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