View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3762_low_7 (Length: 644)
Name: NF3762_low_7
Description: NF3762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3762_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 30413633 - 30413387
Alignment:
| Q |
3 |
gagatgaataagaagaatgtgagctgaaaaaacggcacatttcatttaagttaaaagccggcacgcatgatgtcccac----tctcgccgcttgtctcga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30413633 |
gagatgaataagaagaatgtgagctgaaaaaacggcacatttcatttaagttaaaagccggcacgcatgatgtcccacccactctcgccgcttgtctcga |
30413534 |
T |
|
| Q |
99 |
aattcccaaatgccacgtatcccccaaacacacacctttatctcctctcttgggcggcgtcacgtcacttacgttaagatacttctttgactgcacctct |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413533 |
aattcccaaatgccacgtatcccccaaacacacacctttatctcctctcttgggcggcgtcacgtcacttacgttaagatacttctttgactgcacctct |
30413434 |
T |
|
| Q |
199 |
cacccacaatactaactaatcaatcacattactccattaattccctc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413433 |
cacccacaatactaactaatcaatcacattactccattaattccctc |
30413387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 418 - 627
Target Start/End: Complemental strand, 30413280 - 30413075
Alignment:
| Q |
418 |
ttaaacattcatccgactaggacatgtggatagatatgtcattttaacaaccctagataaactattgatttttgtttgtaagttttatatttttagaaaa |
517 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30413280 |
ttaaacattcattcgactaggatatgtggatagatatgtcattttaacaacccttgataaactattgatttttgt----aagttttatatttttagaaaa |
30413185 |
T |
|
| Q |
518 |
actgtagcaccgtatgttttatttgcgtatatatataccttacccaacctcaacccttctcaccaaagcaagcaccactacccacgtacttcaagttacg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413184 |
actgtagcaccgtatgttttatttgcgtgtatatataccttacccaacctcaacccttctcaccaaagcaagcaccactacccacgtacttcaagttacg |
30413085 |
T |
|
| Q |
618 |
ctattctctc |
627 |
Q |
| |
|
|||||||||| |
|
|
| T |
30413084 |
ctattctctc |
30413075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 30413352 - 30413316
Alignment:
| Q |
293 |
gaagaaatagtaaatatttgtttgagaaaactcaaat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413352 |
gaagaaatagtaaatatttgtttgagaaaactcaaat |
30413316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University