View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3763_high_3 (Length: 320)
Name: NF3763_high_3
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3763_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 2694369 - 2694059
Alignment:
| Q |
10 |
catcatcaaaaatgtattaacattctgtcaaacatctaaacattagatgactctccatccagacgaatgttacaaaacttaatatactattatatcgtgt |
109 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2694369 |
catcaccaaaaatgtattaatattctgtcaaacatctaaacattagatgactctccatccagacgaatgttacaaaacttaatatactattatatcgtgt |
2694270 |
T |
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| Q |
110 |
aaagtttaagagaatatcaat-----------------ttctcttcactcatcaaaattttcatcgactatttttctctactatctattaacatgtacta |
192 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2694269 |
aaagtttaagagaatatcaatataattatttatgacatttctcttcactcatcaaaattttcatcgactatttttctctactatctattaacatgtactt |
2694170 |
T |
|
| Q |
193 |
caatttcactccactaatt-agcacacagaatcaagacaaacaattctttcacaaaattgagaagatcctttttctaaaagtaaagttgcatcaagatcc |
291 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2694169 |
caatttcactccactaatttagcacacagaatcaagacaaacaattctttcataaaattgagaagatcctttttctaaaagcaaagttgcatcaagatcc |
2694070 |
T |
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| Q |
292 |
aaagcacctat |
302 |
Q |
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||||||||||| |
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| T |
2694069 |
aaagcacctat |
2694059 |
T |
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