View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3763_high_4 (Length: 315)

Name: NF3763_high_4
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3763_high_4
NF3763_high_4
[»] chr1 (3 HSPs)
chr1 (57-142)||(1769086-1769171)
chr1 (226-305)||(1769262-1769343)
chr1 (58-94)||(1768996-1769032)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 1769086 - 1769171
Alignment:
Q  57 gaggttgtttatatgaataatgataaattaatttcctttgtatttttcttcttgcatttgtgggtttgatgcagtggaatgaaata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1769086 gaggttgtttatatgaataatgataaattaatttcctttgtatttttcttcttgcatttgtgggtttgatgcagtggaatgaaata 1769171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 1769262 - 1769343
Alignment:
Q  226 cccaaattgtatactttacaagactttacctttgatacctaatttttgttttgcattcaaagtct--aaatctttacctttg 305  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1769262 cccaaattgtatactttataagactttacctttgatacctaatttttgttttgcattcaaagtctaaaaatctttacctttg 1769343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 1768996 - 1769032
Alignment:
Q  58 aggttgtttatatgaataatgataaattaatttcctt 94  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  1768996 aggttgtttgtatgaataatgataaattaaattcctt 1769032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University