View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3763_low_1 (Length: 411)
Name: NF3763_low_1
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3763_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 163 - 401
Target Start/End: Complemental strand, 24884468 - 24884231
Alignment:
| Q |
163 |
ttacctagtaagaccctcgcctctaaggcattcgaacacctgacaagcttgaatgtatcattgaaattaggctcgaaaagaggaaagcccttagaatttt |
262 |
Q |
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| T |
24884468 |
ttacctagtaagaccctcgcctctaaggcattcgaacacctgacaagcttgaatgtatcattgaaactaggctcggaaagaggaaaacccttagaagttt |
24884369 |
T |
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| Q |
263 |
atagaatttattgcctactacctactacggtgtaatggatcaggatgcaatcataagcctagaaactaatgtagttctcggtctccttcgctgacaactt |
362 |
Q |
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| T |
24884368 |
atagaatttattgcctactacctactacggtgtaatggatcaggatacaatcataagcctagaaactaaagtagttctcggtctccttcgctgacaactt |
24884269 |
T |
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| Q |
363 |
ctcataggcagatatacacaaaactctctcatttgatga |
401 |
Q |
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| T |
24884268 |
ctcataggtagatatacac-aaactctctcatttgatga |
24884231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 24884609 - 24884532
Alignment:
| Q |
18 |
ccttcttggtgagcctcatcaactcttcctgaaggttaggcatggcgcctgcgagcagcataaaggagaatagttagt |
95 |
Q |
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| T |
24884609 |
ccttcttggtgagcctcatcaactcttcctgaaggttaggcatggcgcctgtgagcagcataaaggagaatagttagt |
24884532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 18713463 - 18713429
Alignment:
| Q |
181 |
gcctctaaggcattcgaacacctgacaagcttgaa |
215 |
Q |
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| T |
18713463 |
gcctctaaggcattcgaacacctgacaagcttgaa |
18713429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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