View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3763_low_2 (Length: 369)
Name: NF3763_low_2
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3763_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 43647766 - 43648114
Alignment:
| Q |
1 |
accaccaacacactcttctccgcctgcgcatccaacacctccatctacaactccaacacctcctgttgtatcgccaccctcacatactccaatgccaccg |
100 |
Q |
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| T |
43647766 |
accaccaacacactcttctccgcctgcgcatccaacacctccatctacaactccaacacctcctgttgtatcgccaccctcacatactccaatgccaccg |
43647865 |
T |
|
| Q |
101 |
tctcattcactatatccacccccaccgacaggtcctcattatggccgccaatcaccgccaccacctcattcaccaccatctgaatctccaccttctatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43647866 |
tctcattcactatatccacccccaccgacaggtcctcattatggccgccaatcaccgccacc------------accatctgaatctccaccttctatag |
43647953 |
T |
|
| Q |
201 |
gacctcctccgtcactgtcaccaccaccttgtgaagagcatccatccccacccggaccaccatcttcttccacaccaacaccaccagtacatgtatctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43647954 |
gacctcctccgtcactgtcaccaccaccttgtgaagagcatccatccccacccggaccaccatcttcttccacaccaacaccaccagtacatgtatctcc |
43648053 |
T |
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| Q |
301 |
acatccaccggttcaacatactcctccatcaccatcacatccttcccctattcagtataat |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43648054 |
acatccaccggttcaacatactcctccatcaccatcacatccttcccctattcaatataat |
43648114 |
T |
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