View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3763_low_3 (Length: 367)
Name: NF3763_low_3
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3763_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 26128393 - 26128051
Alignment:
| Q |
16 |
gtaggtatgtgctactccacgacgccacaaagagtacggttccttaatttggaaccattgaagctcaaaagaaaacctagagtggacatatttagggagg |
115 |
Q |
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| T |
26128393 |
gtaggtatgtgctactccacgacgccacaaagagtacggttccttaatttggaatcattgaagctcaaaagaaaacctagagtggacatatttagggagg |
26128294 |
T |
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| Q |
116 |
gtctgttactccatggtttaactggcttcataattttcattgtttgaaggcattgtttgataatgatcttttgaaacttttcgaactgaatatttatctt |
215 |
Q |
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| T |
26128293 |
gtctgttactccatgggttaacgagcttcataattttcattgtttgaaggcattgtttgataatgatcttttgaaacttttcgaactgaatatttatctt |
26128194 |
T |
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| Q |
216 |
cacgggtgttctggcttttccattgacgaacttcgctatatttgtcagaattgcaagtaagtaataaaatttgaggattttaggaatacacgtcccttat |
315 |
Q |
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| T |
26128193 |
cacgggtgttctggctttttcattgacgaacttcgctatatttgtcagaattgcaagtaagtaataaaatttgaggattttaggaatacacgtcacttat |
26128094 |
T |
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| Q |
316 |
atgatnnnnnnnttgtaaagttgttgtgactcttgcacctttg |
358 |
Q |
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| T |
26128093 |
atgataaaaagattgtaatgttgttgtgactcttgcacctttg |
26128051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 26128493 - 26128542
Alignment:
| Q |
110 |
gggagggtctgttactccatggtttaactggcttcataattttcattgtt |
159 |
Q |
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| T |
26128493 |
gggagggtctgttactccatggattgattagcttcatcattttcattgtt |
26128542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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