View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3763_low_4 (Length: 323)

Name: NF3763_low_4
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3763_low_4
NF3763_low_4
[»] chr1 (8 HSPs)
chr1 (4-296)||(42287124-42287416)
chr1 (5-129)||(12804505-12804629)
chr1 (8-126)||(50788816-50788934)
chr1 (8-131)||(12774948-12775071)
chr1 (4-123)||(28496106-28496225)
chr1 (8-111)||(31644070-31644173)
chr1 (5-123)||(36989348-36989466)
chr1 (4-124)||(4160384-4160504)
[»] chr8 (2 HSPs)
chr8 (4-125)||(5788721-5788842)
chr8 (5-105)||(33186743-33186843)
[»] chr2 (3 HSPs)
chr2 (4-108)||(38895872-38895976)
chr2 (4-123)||(40040796-40040915)
chr2 (4-123)||(42898305-42898424)
[»] chr7 (2 HSPs)
chr7 (8-124)||(40749401-40749517)
chr7 (8-123)||(44150800-44150915)
[»] chr4 (2 HSPs)
chr4 (4-108)||(22085521-22085625)
chr4 (4-105)||(30518166-30518267)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 42287124 - 42287416
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287124 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 42287223  T
Q  104 ggcaccctcttctctaggtaacaaacatcatctttatatttatatcttcacatcgatgttagtctaattatatttcataaatatgaattcatcactctat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287224 ggcaccctcttctctaggtaacaaacatcatctttatatttatatcttcacatcgatgttagtctaattatatttcataaatatgaattcatcactctat 42287323  T
Q  204 atacataatatatgctacacttttgccaaatgttagggttatacttatatggtttggtattgaatattattttattttatagaagttactgtt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42287324 atacataatatatgctacacttttgccaaatgttagggttatacttatatggtttggtattgaatattattttattttatagaagttagtgtt 42287416  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 12804629 - 12804505
Alignment:
Q  5 aagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtg 104  Q
    ||||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||    
T  12804629 aagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtg 12804530  T
Q  105 gcaccctcttctctaggtaacaaac 129  Q
    |||| |||||||| ||||| |||||    
T  12804529 gcactctcttctcaaggtaccaaac 12804505  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 50788934 - 50788816
Alignment:
Q  8 tggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggca 107  Q
    ||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| |||||||    
T  50788934 tggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggca 50788835  T
Q  108 ccctcttctctaggtaaca 126  Q
    | |||||||| ||||||||    
T  50788834 ctctcttctccaggtaaca 50788816  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 12774948 - 12775071
Alignment:
Q  8 tggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggca 107  Q
    ||||| |||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||  || ||||||||||| |||||||    
T  12774948 tggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggca 12775047  T
Q  108 ccctcttctctaggtaacaaacat 131  Q
    | |||||||| |||||| ||||||    
T  12775048 ctctcttctccaggtaataaacat 12775071  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 28496225 - 28496106
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||||||||||||||| || || |||||||| || ||||||||||||||||| ||| | || || |||||||| |||||||| | |||||| |||    
T  28496225 gaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgt 28496126  T
Q  104 ggcaccctcttctctaggta 123  Q
    |||||||||||||| |||||    
T  28496125 ggcaccctcttctcaaggta 28496106  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 31644173 - 31644070
Alignment:
Q  8 tggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggca 107  Q
    ||||||||||| || ||||||||||  ||||||||||| |||||||||||||| || ||||| || ||||||||| ||||||||| |||||||||||| |    
T  31644173 tggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtggta 31644074  T
Q  108 ccct 111  Q
    ||||    
T  31644073 ccct 31644070  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 36989348 - 36989466
Alignment:
Q  5 aagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtg 104  Q
    |||||||||||||| || || || |||||||||||||||||||||||||||||||| ||||| || |  |||||||| || ||||| | |||||| ||||    
T  36989348 aagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtg 36989447  T
Q  105 gcaccctcttctctaggta 123  Q
    | ||| |||| || |||||    
T  36989448 gaaccatcttttccaggta 36989466  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 4160384 - 4160504
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||| ||||| ||||| || ||   |||||| ||||| || ||||||||||| ||||| || | |||||| |||| ||| ||||  ||||| |||    
T  4160384 gaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgt 4160483  T
Q  104 ggcaccctcttctctaggtaa 124  Q
    || ||||||||||| ||||||    
T  4160484 ggaaccctcttctcaaggtaa 4160504  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 5788842 - 5788721
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||| |||    
T  5788842 gaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgt 5788743  T
Q  104 ggcaccctcttctctaggtaac 125  Q
    || ||||||||||| |||||||    
T  5788742 ggaaccctcttctcaaggtaac 5788721  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 33186743 - 33186843
Alignment:
Q  5 aagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtg 104  Q
    |||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |||||   ||||||| ||||||| |||| |||||||||||    
T  33186743 aagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtg 33186842  T
Q  105 g 105  Q
    |    
T  33186843 g 33186843  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 38895976 - 38895872
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||| ||||| || ||||||||    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| | ||||||||||    
T  38895976 gaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgt 38895877  T
Q  104 ggcac 108  Q
    |||||    
T  38895876 ggcac 38895872  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 40040796 - 40040915
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||| ||||| || || || ||||||||||| ||||||||||||||||| || |||  ||||| |||||| |||| ||| || ||||||||||||    
T  40040796 gaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagatgtgattgt 40040895  T
Q  104 ggcaccctcttctctaggta 123  Q
    ||||| || ||||| |||||    
T  40040896 ggcacactattctccaggta 40040915  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 42898305 - 42898424
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||||||||| || ||||| ||||| ||||| |||||||| || |||||||| || || || || ||||| || |||||||| |||||||| |||    
T  42898305 gaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtgactgt 42898404  T
Q  104 ggcaccctcttctctaggta 123  Q
    || ||||||||||| |||||    
T  42898405 ggaaccctcttctcaaggta 42898424  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 40749401 - 40749517
Alignment:
Q  8 tggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggca 107  Q
    ||||| ||||| || || || ||||||||||| || ||||||||||||||||| ||  |||| ||||||||||||||||||||||  ||||||||||| |    
T  40749401 tggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtgattgtggta 40749500  T
Q  108 ccctcttctctaggtaa 124  Q
    | |||||||| ||||||    
T  40749501 cactcttctcaaggtaa 40749517  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 44150915 - 44150800
Alignment:
Q  8 tggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggca 107  Q
    ||||||||||| || ||||| || | ||||||||||||||| |||||||| || ||    || |||||||||||||| ||||| | |||||||||||| |    
T  44150915 tggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaatacaaatgtgattgtggaa 44150816  T
Q  108 ccctcttctctaggta 123  Q
    || | || ||||||||    
T  44150815 ccatattttctaggta 44150800  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 22085625 - 22085521
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| |||   |||| |||||| |||||||| || | ||||||||||    
T  22085625 gaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgt 22085526  T
Q  104 ggcac 108  Q
    |||||    
T  22085525 ggcac 22085521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 30518267 - 30518166
Alignment:
Q  4 gaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgattggaaagcacattctaagacttgtggtactagagaatatagatgtgattgt 103  Q
    ||||||||| ||||| || ||||||||    ||||||||||| || ||||||||||| || || || || ||||||||||||||||| | |||||| |||    
T  30518267 gaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgt 30518168  T
Q  104 gg 105  Q
    ||    
T  30518167 gg 30518166  T

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