View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3763_low_5 (Length: 321)
Name: NF3763_low_5
Description: NF3763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3763_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 14782755 - 14783048
Alignment:
| Q |
9 |
agcaaaggtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggtta |
108 |
Q |
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| T |
14782755 |
agcaaaagtgctgaagttgaaacaggtagatatgcaacaccccatgagattaaaagattgttaaaccctaacatgataccaacaaaaattgatagggtta |
14782854 |
T |
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| Q |
109 |
acatttttggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattg |
208 |
Q |
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| T |
14782855 |
acattttcggtgtgaaatcagtgaaagggtttcttttggtgagattgaagagataagggagaaaaattgggatgatcaagagagggaagccagcacattg |
14782954 |
T |
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| Q |
209 |
aacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgaggttgaaccaacaaagagtaagaga |
302 |
Q |
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| T |
14782955 |
aacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgagattgaaccaacaaagagtaagaga |
14783048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 14775077 - 14775146
Alignment:
| Q |
205 |
attgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttga |
274 |
Q |
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| T |
14775077 |
attgaacccaagttgaaacccatctactagaacctttatggataaaatagtactttgagagtaaacttga |
14775146 |
T |
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