View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3764_high_1 (Length: 768)

Name: NF3764_high_1
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3764_high_1
NF3764_high_1
[»] chr1 (8 HSPs)
chr1 (326-730)||(14862521-14862926)
chr1 (9-126)||(14868671-14868788)
chr1 (327-399)||(14868405-14868477)
chr1 (201-264)||(14868540-14868603)
chr1 (685-744)||(14862478-14862537)
chr1 (212-264)||(14862988-14863040)
chr1 (698-744)||(14797496-14797542)
chr1 (698-744)||(14806370-14806416)
[»] chr8 (1 HSPs)
chr8 (351-386)||(35453434-35453469)
[»] chr5 (1 HSPs)
chr5 (698-744)||(18115267-18115313)
[»] chr7 (1 HSPs)
chr7 (357-386)||(49104414-49104443)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 326 - 730
Target Start/End: Complemental strand, 14862926 - 14862521
Alignment:
Q  326 cgaaattattagctagtactttatgtaaattaccttgataaacttatgaataatacataaattttcatttgtattagttttttattttcattcatactga 425  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14862926 cgaaactattagctagtactttatgtaaattaccttgataaacttatgaataatacataaattttcatttgtattagttttttattttcattcatactga 14862827  T
Q  426 tcttttaagtttatataattgaaatttccttaaaaacaagtttacataaaaagaacttagaaacgtgcatgaatatactataatataatcgattgtacat 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14862826 tcttttaagtttatataattgaaatttccttaaaaacaagtttacataaaaagaacttagaaacgtgcatgaatatactataatagaatcgattgtacat 14862727  T
Q  526 tccacgtgaaacatgcatgaatatttaataattatctctcggtgccacgagaaaaacataagtgtcagcgaatataatagaacttaggttaagtcttgta 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14862726 tccacgtgaaacatgcatgaatatttaataattatctctcggtgccacgagaaaaacataagtgtcagcgaatataatagaacttaggttaagtcttgta 14862627  T
Q  626 ccaag-nnnnnnnnnnnnnnnctttggttaagtaataaattatggaatgattctgtttatcaattgcctaatttatcagagtctttaaacaattgcctaa 724  Q
    |||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14862626 ccaagaaaaaacaaaaaaaaactttggttaagtaataaattatggaatgattctgtttatcaattgcctaatttatcagagtttttaaacaattgcctaa 14862527  T
Q  725 tttatc 730  Q
    ||||||    
T  14862526 tttatc 14862521  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 14868788 - 14868671
Alignment:
Q  9 caaaggcaaaagagagcatgcatgaatgaatgaattttggttacagaacatgaatgaattggtatattattggtgatgttttgtattcctatatatataa 108  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14868788 caaagacaaaagagagcatgcatgaacgaatgaattttggttacagaacatgaatgaattggtatattattggtgatgttttgtattcctatatatataa 14868689  T
Q  109 tgggtataagtttgatgc 126  Q
    ||||||||||||||||||    
T  14868688 tgggtataagtttgatgc 14868671  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 14868477 - 14868405
Alignment:
Q  327 gaaattattagctagtactttatgtaaattaccttgataaacttatgaataatacataaattttcatttgtat 399  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14868477 gaaattattagctagtattttatgtaaattaccttgataaacttatgaataatacataaattttcatttgtat 14868405  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 14868603 - 14868540
Alignment:
Q  201 gaatagggaggaatatggcgattaaaactgcatttatgttttgtttgaattgacttatttttga 264  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14868603 gaatagggaggaatatggcaattaaaactgcatttatgttttgtttgaattgacttatttttga 14868540  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 685 - 744
Target Start/End: Complemental strand, 14862537 - 14862478
Alignment:
Q  685 caattgcctaatttatcagagtctttaaacaattgcctaatttatctccttaaactatgc 744  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14862537 caattgcctaatttatcagagtttttaaacaattgcctaatttatctccttaaactatgc 14862478  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 14863040 - 14862988
Alignment:
Q  212 aatatggcgattaaaactgcatttatgttttgtttgaattgacttatttttga 264  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  14863040 aatatggcaattaaaactgcatttatgttttgtttaaattgacttatttttga 14862988  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 698 - 744
Target Start/End: Complemental strand, 14797542 - 14797496
Alignment:
Q  698 tatcagagtctttaaacaattgcctaatttatctccttaaactatgc 744  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  14797542 tatcagagtctttaaacaattatctaatttatctccttaaactatgc 14797496  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 698 - 744
Target Start/End: Complemental strand, 14806416 - 14806370
Alignment:
Q  698 tatcagagtctttaaacaattgcctaatttatctccttaaactatgc 744  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  14806416 tatcagagtctttaaacaattatctaatttatctccttaaactatgc 14806370  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 35453469 - 35453434
Alignment:
Q  351 taaattaccttgataaacttatgaataatacataaa 386  Q
    |||| |||||||||||||||||||||||||||||||    
T  35453469 taaactaccttgataaacttatgaataatacataaa 35453434  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 698 - 744
Target Start/End: Original strand, 18115267 - 18115313
Alignment:
Q  698 tatcagagtctttaaacaattgcctaatttatctccttaaactatgc 744  Q
    |||||||||||| || ||||| ||||||||||||||||||| |||||    
T  18115267 tatcagagtcttcaaccaattacctaatttatctccttaaattatgc 18115313  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 386
Target Start/End: Original strand, 49104414 - 49104443
Alignment:
Q  357 accttgataaacttatgaataatacataaa 386  Q
    ||||||||||||||||||||||||||||||    
T  49104414 accttgataaacttatgaataatacataaa 49104443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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