View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_high_10 (Length: 429)
Name: NF3764_high_10
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 33 - 387
Target Start/End: Complemental strand, 44189765 - 44189411
Alignment:
| Q |
33 |
gggaaatgacggttaatttcaacatgcctttttcttggacaagttttactatgaatggattatgagtaatttgagaatcctttgcaaatggcctggacca |
132 |
Q |
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| T |
44189765 |
gggaaatgacggttaatttcaacatgcctttttcttggacaagttttactatgaatggattatgagtaatttgagaatcctttgcaaatggcctggacca |
44189666 |
T |
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| Q |
133 |
ttgcctctaatttttggcagtgttatgtgcttagataaattggtgaccggttatcctcatatgagtgcatgctacccgctaaatatacaatttcattata |
232 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44189665 |
ttgcctctaatttttggcagtgctatgtgcttagataaattggtgaccggttatcctcatatgagtgcatgctacccgctaaatatacaatttcattata |
44189566 |
T |
|
| Q |
233 |
actctaaaatttcacaagcttgattgacaaagcaatcaaattgcttgaacagacccagttaattgacttagatcgtacaaataaataagtaatagtaata |
332 |
Q |
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| T |
44189565 |
actctaaaatttcacaagcttgattgacaaagcaatcaaattgcttgaacagacccagttaattgacttagatcgtacaaataaataagtaatagtaata |
44189466 |
T |
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| Q |
333 |
cacaaagcaaacatagttcatacatatcacaagcataatgtagttaagttcaaac |
387 |
Q |
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| T |
44189465 |
cacaaagcaaatatagttcatacatatcacaagcataatgtagttaagttcaaac |
44189411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 5393082 - 5392941
Alignment:
| Q |
68 |
tggacaagttttactatgaatggattatgagtaatttgagaatcctttgcaaatggcctggaccattgcctctaatttttggcagtgttatgtgcttaga |
167 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||| || |
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| T |
5393082 |
tggagaagttttactatgaatggattatgagtaatttgagaatcctttgcaaatgtcctggacca-tgcctctaaattttggcagtgttttgtgcttcga |
5392984 |
T |
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| Q |
168 |
taaattggtgacc-ggttatcctcatatgagtgcatgctaccc |
209 |
Q |
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||||||||||||| | | ||||||||||| || ||||||||| |
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| T |
5392983 |
taaattggtgaccagataatcctcatatgtatgtatgctaccc |
5392941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 257 - 385
Target Start/End: Complemental strand, 31130543 - 31130415
Alignment:
| Q |
257 |
tgacaaagcaatcaaattgcttgaacagacccagttaattgacttagatcgtacaaataaataagtaatagtaatacacaaagcaaacatagttcataca |
356 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| | || |||||||||||||||||| || ||||||||||| ||||||||| ||| || |
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| T |
31130543 |
tgacaaagtaatcaaattgcttgaacagacccgattaattgatcttgaatgtacaaataaataagtaaaagcaatacacaaaggaaacatagtgcatgca |
31130444 |
T |
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| Q |
357 |
tatcacaagcataatgtagttaagttcaa |
385 |
Q |
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||| |||||| |||||| |||||||||| |
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| T |
31130443 |
tatgacaagccaaatgtatttaagttcaa |
31130415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 13472499 - 13472536
Alignment:
| Q |
326 |
agtaatacacaaagcaaacatagttcatacatatcaca |
363 |
Q |
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|||||||||||||||||||||||| ||| ||||||||| |
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| T |
13472499 |
agtaatacacaaagcaaacatagtgcatgcatatcaca |
13472536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 27229705 - 27229765
Alignment:
| Q |
326 |
agtaatacacaaagcaaacatagttcatacatatcacaagcataatgtagttaagttcaaa |
386 |
Q |
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||||||||| ||||||||| ||| ||||||||||||||||| | | || ||||||||||| |
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| T |
27229705 |
agtaatacagaaagcaaacgcagtgcatacatatcacaagcaaagtttatttaagttcaaa |
27229765 |
T |
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