View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3764_high_11 (Length: 416)

Name: NF3764_high_11
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3764_high_11
NF3764_high_11
[»] chr6 (3 HSPs)
chr6 (16-403)||(6916459-6916835)
chr6 (302-346)||(18803260-18803304)
chr6 (303-341)||(32908377-32908415)
[»] chr4 (10 HSPs)
chr4 (301-358)||(23312468-23312525)
chr4 (301-349)||(24875736-24875784)
chr4 (303-351)||(30127671-30127719)
chr4 (301-342)||(50269868-50269909)
chr4 (154-226)||(52239010-52239082)
chr4 (301-348)||(19447876-19447923)
chr4 (309-359)||(15172712-15172762)
chr4 (297-343)||(51383993-51384039)
chr4 (294-342)||(22596986-22597034)
chr4 (294-330)||(35212745-35212781)
[»] chr5 (4 HSPs)
chr5 (303-352)||(19625927-19625976)
chr5 (301-353)||(13231954-13232006)
chr5 (294-335)||(41345793-41345834)
chr5 (297-341)||(11108511-11108555)
[»] chr8 (5 HSPs)
chr8 (301-353)||(15140361-15140413)
chr8 (295-341)||(30918784-30918830)
chr8 (318-353)||(11498536-11498571)
chr8 (310-342)||(7551466-7551498)
chr8 (301-353)||(25161237-25161289)
[»] chr7 (4 HSPs)
chr7 (294-341)||(9483389-9483436)
chr7 (303-353)||(24401843-24401893)
chr7 (296-352)||(3262871-3262927)
chr7 (296-352)||(21454236-21454292)
[»] chr1 (3 HSPs)
chr1 (296-351)||(43328474-43328529)
chr1 (317-351)||(32637863-32637897)
chr1 (296-357)||(43609809-43609870)
[»] chr3 (4 HSPs)
chr3 (295-341)||(53791959-53792005)
chr3 (296-348)||(35990525-35990577)
chr3 (301-335)||(44576-44610)
chr3 (290-350)||(9210823-9210883)
[»] scaffold0205 (1 HSPs)
scaffold0205 (303-355)||(21430-21482)
[»] chr2 (3 HSPs)
chr2 (301-348)||(3103522-3103569)
chr2 (294-351)||(8518037-8518095)
chr2 (301-337)||(41508548-41508584)
[»] scaffold0024 (1 HSPs)
scaffold0024 (154-224)||(151683-151753)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 6916459 - 6916835
Alignment:
Q  16 atcagaagatgaatcttttcaataatcacattaacacaaacagttcaagtctcacactctgagtgtgccatgccaagtagtagcaacataaagcgcacac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916459 atcagaagatgaatcttttcaataatcacattaacacaaacagttcaagtctcacactctgagtgtgccatgccaagtagtagcaacataaagcgcacac 6916558  T
Q  116 tgttattaacaattcgtgtttccttcctacactcacaaacaagtcatacccatctttgtttgctcttaattttacttcatcatttcaatatgttgtctac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916559 tgttattaacaattcgtgtttccttcctacactcacaaacaagtcatacccatctttgtttgctcttaattttacttcatcatttcaatatgttgtctac 6916658  T
Q  216 taccacattaaacgattacatctcactacaaatcacaacttaaacacaaatacagacaggggacaagacgcattacaacaataacaatttgagaaaattg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6916659 taccacattaaacgattacatctcactacaaatcacaacttaaacacaaatacagacaggggacaagacgcattacaacaataacaatttgagaaaattg 6916758  T
Q  316 aataattgaatgtaaccacatgtgtcaatgtcgtgtcaatgtcaatctttgaagcacacatactcctcgaattatgtgtatcctgatg 403  Q
    |||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6916759 aataattgaatgtaaccacat-----------gtgtcaatgtcaatctttgaagcacacatactcctcgaattatgtgtatcccgatg 6916835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 18803260 - 18803304
Alignment:
Q  302 atttgagaaaattgaataattgaatgtaaccacatgtgtcaatgt 346  Q
    |||||||||||||  |||||||||||||| |||||||||||||||    
T  18803260 atttgagaaaattacataattgaatgtaatcacatgtgtcaatgt 18803304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 32908377 - 32908415
Alignment:
Q  303 tttgagaaaattgaataattgaatgtaaccacatgtgtc 341  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  32908377 tttgagaaaatagaataattgaatgtaaccacgtgtgtc 32908415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 23312468 - 23312525
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtcaatgtc 358  Q
    |||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  23312468 aatttgagaaaattgaattattgaatgtaatcacatttgtcagtgtcgtgtcaatgtc 23312525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 24875736 - 24875784
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgt 349  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  24875736 aatttgagaaaatagaataattgaatgtaaccacatgtatcagtgtcgt 24875784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 30127719 - 30127671
Alignment:
Q  303 tttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgt 351  Q
    |||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  30127719 tttgagaaaatgaaattattgaatgtaaccacatgtgtcaatgtcgtgt 30127671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 50269868 - 50269909
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtca 342  Q
    |||||||||||||||||| |||||||||| ||||||||||||    
T  50269868 aatttgagaaaattgaattattgaatgtacccacatgtgtca 50269909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 52239010 - 52239082
Alignment:
Q  154 acaagtcatacccatctttgtttgctcttaattttacttcatcatttcaatatgttgtctactaccacattaa 226  Q
    |||| ||| ||||||||| |||||||||||| || ||||| ||| |||||||  || ||||||||||||||||    
T  52239010 acaaatcacacccatcttcgtttgctcttaaattcacttcctcagttcaatacattatctactaccacattaa 52239082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 19447923 - 19447876
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcg 348  Q
    ||||||| ||||||| |||||||||||||||||||||| || ||||||    
T  19447923 aatttgataaaattggataattgaatgtaaccacatgtatcgatgtcg 19447876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 15172762 - 15172712
Alignment:
Q  309 aaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtcaatgtca 359  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||| |||||    
T  15172762 aaaattgaataattgaatgtaaccacatatgtcggtgttgtgtcagtgtca 15172712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 51384039 - 51383993
Alignment:
Q  297 taacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaa 343  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||||    
T  51384039 taacaatttgtgaaaatgaaataattgaatgtaatcacatgtgtcaa 51383993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 22597034 - 22596986
Alignment:
Q  294 caataacaatttgagaaaattgaataattgaatgtaaccacatgtgtca 342  Q
    |||||| ||||||||||||||| |||||| || |||| |||||||||||    
T  22597034 caataataatttgagaaaattgcataattcaacgtaatcacatgtgtca 22596986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 35212781 - 35212745
Alignment:
Q  294 caataacaatttgagaaaattgaataattgaatgtaa 330  Q
    |||||| |||||||||||||| |||||||||||||||    
T  35212781 caataataatttgagaaaattaaataattgaatgtaa 35212745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 19625976 - 19625927
Alignment:
Q  303 tttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtc 352  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgtc 19625927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 13232006 - 13231954
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtca 353  Q
    ||||||| ||||| || ||| | ||||||||||||||||||||||||||||||    
T  13232006 aatttgacaaaatagattaaataaatgtaaccacatgtgtcaatgtcgtgtca 13231954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 41345834 - 41345793
Alignment:
Q  294 caataacaatttgagaaaattgaataattgaatgtaaccaca 335  Q
    |||||| | |||||||||||||| ||||||||||||||||||    
T  41345834 caataatagtttgagaaaattgactaattgaatgtaaccaca 41345793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 11108511 - 11108555
Alignment:
Q  297 taacaatttgagaaaattgaataattgaatgtaaccacatgtgtc 341  Q
    |||||||||||||||||  ||||||| ||||||||||||| ||||    
T  11108511 taacaatttgagaaaatgaaataattcaatgtaaccacatttgtc 11108555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 15140413 - 15140361
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtca 353  Q
    ||||||||||| ||||||||||||||||||||||| |||||  ||||||||||    
T  15140413 aatttgagaaatttgaataattgaatgtaaccacacgtgtcggtgtcgtgtca 15140361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 30918830 - 30918784
Alignment:
Q  295 aataacaatttgagaaaattgaataattgaatgtaaccacatgtgtc 341  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  30918830 aataataattttagaaagttgaataattgaatgtaaccacatgtgtc 30918784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 11498571 - 11498536
Alignment:
Q  318 taattgaatgtaaccacatgtgtcaatgtcgtgtca 353  Q
    |||||||||||||||||||||||||||||| |||||    
T  11498571 taattgaatgtaaccacatgtgtcaatgtcttgtca 11498536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 7551498 - 7551466
Alignment:
Q  310 aaattgaataattgaatgtaaccacatgtgtca 342  Q
    |||||||||||||||||||||| ||||||||||    
T  7551498 aaattgaataattgaatgtaactacatgtgtca 7551466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 25161237 - 25161289
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtca 353  Q
    ||||||| ||||| | |||||||||||| | ||||||||||| ||||||||||    
T  25161237 aatttgaaaaaatggtataattgaatgtcatcacatgtgtcagtgtcgtgtca 25161289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 9483389 - 9483436
Alignment:
Q  294 caataacaatttgagaaaattgaataattgaatgtaaccacatgtgtc 341  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  9483389 caataataatttgagaaaatagaataattgaatgtaaccatatgtgtc 9483436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 24401843 - 24401893
Alignment:
Q  303 tttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtca 353  Q
    ||||||||||| || ||||||||||||| ||||||||||| | ||||||||    
T  24401843 tttgagaaaatggattaattgaatgtaatcacatgtgtcagtttcgtgtca 24401893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 3262927 - 3262871
Alignment:
Q  296 ataacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtc 352  Q
    |||| ||||||||||| |  |||| ||||||| |||||||||||||| |||||||||    
T  3262927 ataataatttgagaaagtgaaatatttgaatgcaaccacatgtgtcagtgtcgtgtc 3262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 21454292 - 21454236
Alignment:
Q  296 ataacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtc 352  Q
    |||| ||||||| ||||| || | ||||||||||||||||||| ||| |||||||||    
T  21454292 ataataatttgaaaaaatggatttattgaatgtaaccacatgtctcagtgtcgtgtc 21454236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 43328474 - 43328529
Alignment:
Q  296 ataacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgt 351  Q
    |||| |||||||||||||  ||||||| ||||||||||||||||||| ||||||||    
T  43328474 ataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgt 43328529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 32637863 - 32637897
Alignment:
Q  317 ataattgaatgtaaccacatgtgtcaatgtcgtgt 351  Q
    |||||||||||||| ||||||||||||||||||||    
T  32637863 ataattgaatgtaatcacatgtgtcaatgtcgtgt 32637897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 43609870 - 43609809
Alignment:
Q  296 ataacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtcaatgt 357  Q
    |||| |||||||||||||   |||||||||||||| |||||||||| |||| || |||||||    
T  43609870 ataataatttgagaaaataacataattgaatgtaatcacatgtgtccatgttgtatcaatgt 43609809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 53792005 - 53791959
Alignment:
Q  295 aataacaatttgagaaaattgaataattgaatgtaaccacatgtgtc 341  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||    
T  53792005 aataataatttgagaaaaaggaataattgaatgtaaccacatgtgtc 53791959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 35990577 - 35990525
Alignment:
Q  296 ataacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcg 348  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||| |||||    
T  35990577 ataataatttgagaaaataaaataactgaatgtaaccacatgtgtcagtgtcg 35990525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 44610 - 44576
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccaca 335  Q
    ||||||||||||||| |||||||||||||||||||    
T  44610 aatttgagaaaattgtataattgaatgtaaccaca 44576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 9210883 - 9210823
Alignment:
Q  290 acaacaataacaatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtg 350  Q
    ||||| |||| |||||||||||||   |||||| |||| || |||||||||||||||||||    
T  9210883 acaacgataataatttgagaaaatgacataattcaatggaatcacatgtgtcaatgtcgtg 9210823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 21430 - 21482
Alignment:
Q  303 tttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcgtgtcaat 355  Q
    |||||||||||  ||||||||||||||||||||||| ||| ||| ||||||||    
T  21430 tttgagaaaataaaataattgaatgtaaccacatgtatcagtgttgtgtcaat 21482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 3103569 - 3103522
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatgtgtcaatgtcg 348  Q
    |||||||||||||   |||||||||||||||| |||||||||||||||    
T  3103569 aatttgagaaaataagataattgaatgtaaccgcatgtgtcaatgtcg 3103522  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 8518037 - 8518095
Alignment:
Q  294 caataacaatttgagaaaattgaa-taattgaatgtaaccacatgtgtcaatgtcgtgt 351  Q
    |||||||||||||||||||| ||| |||||||||||||| | |||||||  ||||||||    
T  8518037 caataacaatttgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcgtgt 8518095  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 41508548 - 41508584
Alignment:
Q  301 aatttgagaaaattgaataattgaatgtaaccacatg 337  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  41508548 aatttgagaaaatagaataattgaatgtaactacatg 41508584  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 151753 - 151683
Alignment:
Q  154 acaagtcatacccatctttgtttgctcttaattttacttcatcatttcaatatgttgtctactaccacatt 224  Q
    |||||||| |||||||||||||   ||||||||||||||| ||  |||||||  || ||||||||||||||    
T  151753 acaagtcaaacccatctttgttacttcttaattttacttcctccgttcaatacattatctactaccacatt 151683  T

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