View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3764_high_13 (Length: 381)

Name: NF3764_high_13
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3764_high_13
NF3764_high_13
[»] chr7 (34 HSPs)
chr7 (18-152)||(29427311-29427445)
chr7 (18-148)||(17904163-17904293)
chr7 (18-148)||(26770179-26770309)
chr7 (18-148)||(46467482-46467612)
chr7 (18-148)||(37179479-37179608)
chr7 (18-148)||(6387839-6387969)
chr7 (18-148)||(6389732-6389862)
chr7 (18-149)||(41922001-41922132)
chr7 (18-140)||(9876271-9876393)
chr7 (18-148)||(29890973-29891103)
chr7 (25-144)||(31503091-31503210)
chr7 (18-149)||(4405108-4405239)
chr7 (39-149)||(19523863-19523975)
chr7 (49-145)||(9332364-9332460)
chr7 (33-133)||(33974506-33974606)
chr7 (33-148)||(12252069-12252184)
chr7 (33-149)||(43701550-43701666)
chr7 (33-148)||(29722955-29723070)
chr7 (33-149)||(31858257-31858372)
chr7 (37-133)||(46689878-46689974)
chr7 (37-128)||(9215631-9215722)
chr7 (33-148)||(33379130-33379244)
chr7 (71-133)||(49011058-49011120)
chr7 (33-149)||(33915716-33915830)
chr7 (116-155)||(46467328-46467367)
chr7 (115-149)||(4405353-4405387)
chr7 (115-149)||(29890825-29890859)
chr7 (115-148)||(17904407-17904440)
chr7 (115-148)||(29723381-29723414)
chr7 (115-148)||(37179331-37179364)
chr7 (33-90)||(48049057-48049114)
chr7 (33-128)||(5514797-5514891)
chr7 (115-148)||(6387692-6387725)
chr7 (116-149)||(26770424-26770457)
[»] chr3 (35 HSPs)
chr3 (18-149)||(29371685-29371816)
chr3 (18-148)||(18996967-18997097)
chr3 (18-148)||(18999506-18999636)
chr3 (18-149)||(1352143-1352274)
chr3 (18-148)||(32677624-32677754)
chr3 (18-148)||(39528749-39528879)
chr3 (18-148)||(28228436-28228566)
chr3 (18-148)||(41349518-41349648)
chr3 (18-148)||(39807126-39807256)
chr3 (18-149)||(55365907-55366038)
chr3 (18-141)||(29014837-29014960)
chr3 (18-149)||(36737981-36738112)
chr3 (18-145)||(21974152-21974279)
chr3 (18-145)||(21996583-21996710)
chr3 (18-142)||(38855323-38855447)
chr3 (18-145)||(22157261-22157388)
chr3 (18-133)||(39518422-39518537)
chr3 (20-148)||(32839949-32840076)
chr3 (35-133)||(49041011-49041107)
chr3 (79-148)||(49319347-49319416)
chr3 (115-149)||(29014689-29014723)
chr3 (115-149)||(36737833-36737867)
chr3 (115-149)||(38855561-38855595)
chr3 (115-149)||(39518651-39518685)
chr3 (115-149)||(41349370-41349404)
chr3 (115-148)||(1351996-1352029)
chr3 (115-148)||(18997211-18997244)
chr3 (115-148)||(18999750-18999783)
chr3 (115-148)||(39528993-39529026)
chr3 (116-148)||(46878980-46879012)
chr3 (36-123)||(837370-837455)
chr3 (115-148)||(29371538-29371571)
chr3 (115-148)||(32677477-32677510)
chr3 (115-148)||(39806979-39807012)
chr3 (42-142)||(34667662-34667762)
[»] chr5 (25 HSPs)
chr5 (183-364)||(24234585-24234770)
chr5 (18-148)||(12399093-12399223)
chr5 (18-148)||(34208538-34208668)
chr5 (18-148)||(29874954-29875084)
chr5 (18-148)||(23090298-23090428)
chr5 (18-148)||(4145694-4145824)
chr5 (18-148)||(4695309-4695439)
chr5 (18-149)||(3077596-3077727)
chr5 (18-133)||(42757957-42758072)
chr5 (33-133)||(12096365-12096466)
chr5 (33-148)||(41610579-41610694)
chr5 (79-148)||(42793040-42793109)
chr5 (18-83)||(22646056-22646121)
chr5 (81-145)||(4434783-4434847)
chr5 (115-149)||(29875198-29875232)
chr5 (115-149)||(42793562-42793596)
chr5 (115-148)||(12398946-12398979)
chr5 (116-149)||(23090543-23090576)
chr5 (116-149)||(41610372-41610405)
chr5 (115-148)||(42757805-42757838)
chr5 (37-149)||(19574685-19574795)
chr5 (99-133)||(594328-594362)
chr5 (79-145)||(8718028-8718094)
chr5 (33-127)||(22528023-22528117)
chr5 (115-149)||(34208782-34208816)
[»] chr8 (24 HSPs)
chr8 (18-149)||(33837876-33838007)
chr8 (18-148)||(2508943-2509073)
chr8 (18-148)||(28378947-28379077)
chr8 (18-143)||(13469652-13469777)
chr8 (18-148)||(45334423-45334553)
chr8 (18-149)||(25106210-25106341)
chr8 (18-148)||(38495619-38495749)
chr8 (25-149)||(27793345-27793469)
chr8 (18-149)||(9739984-9740115)
chr8 (21-149)||(32183630-32183760)
chr8 (18-104)||(2626385-2626472)
chr8 (79-149)||(27024432-27024502)
chr8 (81-149)||(25978969-25979037)
chr8 (33-151)||(8235159-8235276)
chr8 (33-113)||(3203413-3203492)
chr8 (86-133)||(2626667-2626714)
chr8 (115-149)||(27027655-27027689)
chr8 (115-148)||(25106455-25106488)
chr8 (115-148)||(28379191-28379224)
chr8 (115-148)||(33837729-33837762)
chr8 (115-148)||(45334276-45334309)
chr8 (116-148)||(9740231-9740263)
chr8 (116-149)||(13469507-13469540)
chr8 (115-148)||(38495472-38495505)
[»] chr6 (16 HSPs)
chr6 (18-149)||(27312263-27312394)
chr6 (18-149)||(32274433-32274564)
chr6 (18-141)||(5003889-5004012)
chr6 (18-157)||(8504849-8504988)
chr6 (46-149)||(12174699-12174802)
chr6 (20-149)||(29452691-29452821)
chr6 (33-148)||(18741947-18742062)
chr6 (20-148)||(31171139-31171267)
chr6 (59-149)||(7156413-7156503)
chr6 (18-87)||(2543142-2543211)
chr6 (100-148)||(29302500-29302548)
chr6 (115-149)||(27312113-27312147)
chr6 (115-148)||(8504733-8504766)
chr6 (115-149)||(2543325-2543359)
chr6 (115-148)||(32274678-32274711)
chr6 (116-148)||(18742191-18742223)
[»] chr1 (29 HSPs)
chr1 (21-149)||(4817268-4817396)
chr1 (18-149)||(47669118-47669249)
chr1 (18-148)||(46220259-46220389)
chr1 (21-148)||(18126851-18126978)
chr1 (18-148)||(10737848-10737978)
chr1 (20-148)||(9831503-9831631)
chr1 (18-149)||(4055483-4055614)
chr1 (18-149)||(48564817-48564947)
chr1 (18-148)||(3384742-3384870)
chr1 (18-133)||(8889457-8889572)
chr1 (18-147)||(7414208-7414337)
chr1 (46-148)||(1236205-1236307)
chr1 (69-149)||(1749521-1749601)
chr1 (18-128)||(39241172-39241282)
chr1 (79-148)||(33020206-33020275)
chr1 (33-125)||(26842462-26842552)
chr1 (33-154)||(33846820-33846941)
chr1 (33-154)||(33947037-33947158)
chr1 (115-151)||(10737698-10737734)
chr1 (115-151)||(46220503-46220539)
chr1 (20-91)||(37875849-37875920)
chr1 (115-148)||(47669363-47669396)
chr1 (115-147)||(1236071-1236103)
chr1 (117-149)||(48565063-48565095)
chr1 (33-133)||(49112439-49112535)
chr1 (115-145)||(9831747-9831777)
chr1 (115-149)||(33023428-33023462)
chr1 (115-149)||(37875726-37875760)
chr1 (115-148)||(8889687-8889720)
[»] chr2 (15 HSPs)
chr2 (18-146)||(15233757-15233885)
chr2 (18-149)||(43040996-43041127)
chr2 (18-149)||(35793054-35793184)
chr2 (18-151)||(41252412-41252545)
chr2 (18-149)||(31296082-31296213)
chr2 (21-148)||(44104699-44104833)
chr2 (18-148)||(41642891-41643024)
chr2 (18-133)||(31903527-31903641)
chr2 (79-148)||(10118660-10118729)
chr2 (19-133)||(21727684-21727801)
chr2 (115-149)||(10112338-10112372)
chr2 (79-149)||(36963130-36963200)
chr2 (115-148)||(15233999-15234032)
chr2 (115-148)||(43040849-43040882)
chr2 (116-148)||(44104546-44104578)
[»] chr4 (20 HSPs)
chr4 (18-149)||(45590741-45590872)
chr4 (18-138)||(34334342-34334462)
chr4 (18-149)||(8955923-8956054)
chr4 (30-149)||(33288564-33288683)
chr4 (18-142)||(49162108-49162231)
chr4 (56-149)||(30469353-30469446)
chr4 (49-145)||(39481906-39482002)
chr4 (18-148)||(18835705-18835837)
chr4 (20-133)||(50774207-50774325)
chr4 (79-149)||(19256185-19256255)
chr4 (33-149)||(26025685-26025801)
chr4 (98-149)||(36016278-36016329)
chr4 (79-133)||(36968353-36968407)
chr4 (20-82)||(36971115-36971176)
chr4 (33-133)||(33109063-33109163)
chr4 (114-148)||(19257103-19257137)
chr4 (115-150)||(8955774-8955809)
chr4 (115-149)||(49162332-49162366)
chr4 (115-148)||(45590986-45591019)
chr4 (115-147)||(39482106-39482138)
[»] scaffold0103 (2 HSPs)
scaffold0103 (18-149)||(44618-44750)
scaffold0103 (115-155)||(44862-44902)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 29427311 - 29427445
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29427311 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 29427410  T
Q  118 aaacatcaaaagaaaaggaatggagggagtatcaa 152  Q
    |||||||||||||||||||||||||||||||||||    
T  29427411 aaacatcaaaagaaaaggaatggagggagtatcaa 29427445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 17904293 - 17904163
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17904293 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 17904194  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  17904193 aaacatcaaaagaaaaggaatggagggagta 17904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 26770309 - 26770179
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  26770309 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatttagttgaagttcta 26770210  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  26770209 aaacatcaaaagaaaaggaatggagggagta 26770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 46467482 - 46467612
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46467482 actttaatagtttattgtgttttccaacaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 46467581  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  46467582 aaacatcaaaagaaaaggaatggagggagta 46467612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 37179479 - 37179608
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37179479 actttaatagtttattgtgttttccaacaagggtaaactt-agaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 37179577  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  37179578 aaacatcaaaagaaaaggaatggagggagta 37179608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 6387839 - 6387969
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||    
T  6387839 actttaatagtttattgtgttttccaacaagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgcagttcta 6387938  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  6387939 aaacatcaaaagaaaaggaatggagggagta 6387969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 6389862 - 6389732
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6389862 actttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 6389763  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||| |||| ||||||||||||||    
T  6389762 aaacatcaaaacaaaatgaatggagggagta 6389732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 41922001 - 41922132
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  41922001 actttaatagtttattgtgtttttcaacaagggtaaacttgataaaacaatattaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 41922100  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||| ||| ||||||||||    
T  41922101 aaacatcaaaagaaaagaaatagagggagtat 41922132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 9876393 - 9876271
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  9876393 actttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagtttta 9876294  T
Q  118 aaacatcaaaagaaaaggaatgg 140  Q
    |||||||||||||||||||||||    
T  9876293 aaacatcaaaagaaaaggaatgg 9876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 29890973 - 29891103
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||    
T  29890973 actttaatagtttattgtgttttccatcaaggataaacttgagaaaacaatcataaattcactaaaacatcaaaaattttggaatatagttgaagtttta 29891072  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  29891073 aaacatcaaaagaaaaggaatggagggagta 29891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 31503091 - 31503210
Alignment:
Q  25 tagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 124  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31503091 tagtttatagtgttttccaacaagggtaaacttaagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 31503190  T
Q  125 aaaagaaaaggaatggaggg 144  Q
    ||||||||||||| ||||||    
T  31503191 aaaagaaaaggaacggaggg 31503210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 4405239 - 4405108
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||    
T  4405239 actttaataatttatggtgttttccaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaatgttttagaatatagttgaagtttta 4405140  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||| ||||||||||||||    
T  4405139 aaacatcaaaagaaaagaaatggagggagtat 4405108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 19523863 - 19523975
Alignment:
Q  39 ttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca--aaagaaaagga 136  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||    
T  19523863 ttccaacaagggtaaacttgataaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctaaaacatcaacaaaaaaaagga 19523962  T
Q  137 atggagggagtat 149  Q
    || ||||||||||    
T  19523963 atagagggagtat 19523975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 9332460 - 9332364
Alignment:
Q  49 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  9332460 ggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaaaaatggaggga 9332364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 33974606 - 33974506
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||    
T  33974606 tgtgtttttcaacaagggtaaacttgggaaaaaaatattaaatatactaaaacataaaatattttggaatatagttgaagttcgaaaacatcaaaagaaa 33974507  T
Q  133 a 133  Q
    |    
T  33974506 a 33974506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 12252184 - 12252069
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| |||| || ||||||||| |||||||| | ||||| || || |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  12252184 tgtgtttttcaactagagtaaacttgggaaaacaagattaaatatattagaacatcaaatattttggaatatagttgaagttctaaaacatcaaaagaaa 12252085  T
Q  133 aggaatggagggagta 148  Q
    |  |||||||||||||    
T  12252084 aaaaatggagggagta 12252069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 43701666 - 43701550
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| |||   ||| |||| ||||  | |||||||||||||  |||||||||  |||| |||||||||||||||||||||||    
T  43701666 tgtgtttttcaacaagggtaaaattggataaaaaatattaaaaattctaaaacatcaaattttttggaatgaagtttaagttctaaaacatcaaaagaaa 43701567  T
Q  133 aggaatggagggagtat 149  Q
    |||||||||||||||||    
T  43701566 aggaatggagggagtat 43701550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 29723070 - 29722955
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| |||   ||| | |||||||  |  |||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  29723070 tgtgtttttcaacaagggtaaaattggataaaaagtaataaaaattataaaacatcaaaagttttggaataaagtttaagttctaaaatatcaaaagaaa 29722971  T
Q  133 aggaatggagggagta 148  Q
    |||||||||| |||||    
T  29722970 aggaatggagagagta 29722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 31858257 - 31858372
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| |||| |||||||| ||| ||||| || | ||||| |||||||||||||||  ||||  ||||||||||||||| |||||||||||||||||    
T  31858257 tgtgtttttcaacgagggtaaatttgggaaaaaaa-attaaatatactaaaacatcaaatattttaaaatatagttgaagttgtaaaacatcaaaagaaa 31858355  T
Q  133 aggaatggagggagtat 149  Q
    |  ||||||||||||||    
T  31858356 aaaaatggagggagtat 31858372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 46689974 - 46689878
Alignment:
Q  37 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||| ||| ||||||||||||| ||||| |||| |||   ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  46689974 tttttcaaaaagggtaaacttgggaaaaaaatattaaccatactaaaacatcaagtattttggaatatagttgaagttctaaaacatcaaaagaaaa 46689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 9215631 - 9215722
Alignment:
Q  37 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaa 128  Q
    |||| ||||||||||||| |||| |||| |||| || || ||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  9215631 tttttcaacaagggtaaatttgaaaaaaaaatattacatatactaaaacattaaatattttggaatatagttgaagttctaaaacatcaaaa 9215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 33379130 - 33379244
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||| || || |||| ||||  | |||||||||||||  ||||| |||  ||||||||||||||||||||||||||||    
T  33379130 tgtgtttttcaacaagggtaaaattg-gataaaaatattaaaaatcctaaaacatcaaatattttgaaatcaagttgaagttctaaaacatcaaaagaaa 33379228  T
Q  133 aggaatggagggagta 148  Q
    || |||||||||||||    
T  33379229 agaaatggagggagta 33379244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 49011058 - 49011120
Alignment:
Q  71 taaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  49011058 taaatatactaaaacatcaaatgttttgaaatatagttgaagtcctaaaacatcaaaagaaaa 49011120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 33915830 - 33915716
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| |||||||| |||||||| ||||| || | ||||| |||||||||||||||  ||||| ||||||||| || ||| |||||| |||||||||    
T  33915830 tgtgtttttcaacaagg-taaacttgggaaaaaaaaattaaatatactaaaacatcaaatattttgaaatatagttaaaattcaaaaacaacaaaagaaa 33915732  T
Q  133 aggaatggagggagtat 149  Q
    |  ||||||||||||||    
T  33915731 a-aaatggagggagtat 33915716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 46467367 - 46467328
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagtatcaaata 155  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  46467367 taaaacatcaaaagaaaaggaatggagggagtataaaata 46467328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 4405353 - 4405387
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  4405353 ctaaaacatcaaaagaaaaggaatggagggagtat 4405387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 29890859 - 29890825
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  29890859 ctaaaacatcaaaagaaaaggaatggagggagtat 29890825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 17904407 - 17904440
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  17904407 ctaaaacatcaaaagaaaaggaatggagggagta 17904440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 29723381 - 29723414
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  29723381 ctaaaacatcaaaagaaaaggaatggagggagta 29723414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 37179364 - 37179331
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  37179364 ctaaaacatcaaaagaaaaggaatggagggagta 37179331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 48049114 - 48049057
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaa 90  Q
    |||||||| ||||| ||||||||||| ||||| |||| ||||| ||||||||||||||    
T  48049114 tgtgtttttcaacaggggtaaacttgggaaaaaaatattaaatatactaaaacatcaa 48049057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 5514891 - 5514797
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaa 128  Q
    ||||||||  ||||||||||||||||| || | |||| ||||| |||||||  ||||||  |||| ||||||| || |||||||||||||| ||||    
T  5514891 tgtgttttttaacaagggtaaacttgaaaata-aatattaaatatactaaataatcaaatattttagaatatatttaaagttctaaaacattaaaa 5514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 6387725 - 6387692
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||| ||||    
T  6387725 ctaaaacatcaaaagaaaaggaatggaggaagta 6387692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 26770424 - 26770457
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||| |||||||||||||||    
T  26770424 taaaacatcaaaagaaaatgaatggagggagtat 26770457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 29371685 - 29371816
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29371685 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 29371784  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  29371785 aaacatcaaaagaaaaggaatggagggagtat 29371816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 18997097 - 18996967
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18997097 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 18996998  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  18996997 aaacatcaaaagaaaaggaatggagggagta 18996967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 18999636 - 18999506
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18999636 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 18999537  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  18999536 aaacatcaaaagaaaaggaatggagggagta 18999506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 1352143 - 1352274
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  1352143 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 1352242  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  1352243 aaacatcaaaagaaaaggaatggagggagtat 1352274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 32677624 - 32677754
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  32677624 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggtatatagttgaagttcta 32677723  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  32677724 aaacatcaaaagaaaaggaatggagggagta 32677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 39528879 - 39528749
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  39528879 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 39528780  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  39528779 aaacatcaaaagaaaaggaatggagggagta 39528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 28228566 - 28228436
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28228566 actttaatagtttattgtattttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 28228467  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||||    
T  28228466 aaacatcaaaagaaaaggaatggagagagta 28228436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 41349518 - 41349648
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  41349518 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttagaatatagttgaagttcta 41349617  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  41349618 aaacatcaaaagaaaaggaatggagggagta 41349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 39807126 - 39807256
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  39807126 actttaatagtttattgtgttttccaacgagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgtaatatagttgaagttcta 39807225  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||| ||||    
T  39807226 aaacatcaaaagaaaaggaatggaggaagta 39807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 55366038 - 55365907
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||    
T  55366038 actttaatagtttattgtgttttctaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttgaaatatagttgaagttcta 55365939  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||| |||||||||    
T  55365938 aaacatcaaaagaaaaggaatgaagggagtat 55365907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 29014837 - 29014960
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29014837 actttaatagtttaatgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 29014936  T
Q  118 aaacatcaaaagaaaaggaatgga 141  Q
    |||||| |||| |||| |||||||    
T  29014937 aaacataaaaaaaaaaagaatgga 29014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 36737981 - 36738112
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| ||||||||    
T  36737981 actttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttaaaatatagttaaagttcta 36738080  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||| | |||||||    
T  36738081 aaacatcaaaagaaaaggaatgaatggagtat 36738112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21974279 - 21974152
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  21974279 actttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaaattcta 21974180  T
Q  118 aaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||| ||||||||||    
T  21974179 aaacatcaaaagaaaagaaatggaggga 21974152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 21996710 - 21996583
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  21996710 actttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaaattcta 21996611  T
Q  118 aaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||| ||||||||||    
T  21996610 aaacatcaaaagaaaagaaatggaggga 21996583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 38855447 - 38855323
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||    
T  38855447 actttaatagtttatggtgtttttcaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgatgtttta 38855348  T
Q  118 aaacatcaaaagaaaaggaatggag 142  Q
    |||||||||||||||||||||||||    
T  38855347 aaacatcaaaagaaaaggaatggag 38855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 22157388 - 22157261
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  22157388 actttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaatatcaaaagttttagaatatagttgaagttcta 22157289  T
Q  118 aaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||| ||||||||||    
T  22157288 aaacatcaaaagaaaagaaatggaggga 22157261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 39518537 - 39518422
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||    
T  39518537 actttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaatatcaaaagttttgaaatatagttgaagtttta 39518438  T
Q  118 aaacatcaaaagaaaa 133  Q
    ||||||||||| ||||    
T  39518437 aaacatcaaaaaaaaa 39518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 32840076 - 32839949
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 119  Q
    |||||||||||||||||||||| |||||||  |||||| |||||| |||||||| || |||||||||||||||  |||  ||||||||||||||||||||    
T  32840076 tttaatagtttattgtgttttctaacaaggacaaacttaagaaaataataataa-ttcactaaaacatcaaaaaatttaaaatatagttgaagttctaaa 32839978  T
Q  120 acatcaaaagaaaaggaatggagggagta 148  Q
    | || ||||||||| ||||||||||||||    
T  32839977 atataaaaagaaaatgaatggagggagta 32839949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 49041011 - 49041107
Alignment:
Q  35 tgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||||| |||||||||||||| || |||||  ||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  49041011 tgtttttcaacaagggtaaacgtgggaaaa--atattaaatatactaaaacatcaaatattttggaacatagttgaagttctaaaacatcaaaagaaaa 49041107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 49319416 - 49319347
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||| |||| ||||  |||| |||||||||||||||||||||||||||||||||| ||||    
T  49319416 ctaaaacatcaaaatttttagaatgaagtttaagttctaaaacatcaaaagaaaaggaatggaggaagta 49319347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 29014723 - 29014689
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  29014723 ctaaaacatcaaaagaaaaggaatggagggagtat 29014689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 36737867 - 36737833
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  36737867 ctaaaacatcaaaagaaaaggaatggagggagtat 36737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 38855561 - 38855595
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  38855561 ctaaaacatcaaaagaaaaggaatggagggagtat 38855595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 39518651 - 39518685
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  39518651 ctaaaacatcaaaagaaaaggaatggagggagtat 39518685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 41349404 - 41349370
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  41349404 ctaaaacatcaaaagaaaaggaatggagggagtat 41349370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 1352029 - 1351996
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  1352029 ctaaaacatcaaaagaaaaggaatggagggagta 1351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 18997211 - 18997244
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  18997211 ctaaaacatcaaaagaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 18999750 - 18999783
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  18999750 ctaaaacatcaaaagaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 39528993 - 39529026
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  39528993 ctaaaacatcaaaagaaaaggaatggagggagta 39529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 46878980 - 46879012
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  46878980 taaaacatcaaaagaaaaggaatggagggagta 46879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 837455 - 837370
Alignment:
Q  36 gttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacat 123  Q
    ||||| |||||  ||||||||||| |||| |||| ||| | |||||||| ||||||| |||| |||| ||||||||||||||||||||    
T  837455 gtttttcaacacaggtaaacttgaaaaaa-aatattaattatactaaaatatcaaaa-ttttagaatttagttgaagttctaaaacat 837370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 29371571 - 29371538
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  29371571 ctaaaacatcaaaagaaaatgaatggagggagta 29371538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 32677510 - 32677477
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  32677510 ctaaaacatcaaaagaaaatgaatggagggagta 32677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 39807012 - 39806979
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| ||||||||    
T  39807012 ctaaaacatcaaaagaaaaggaatgaagggagta 39806979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 34667662 - 34667762
Alignment:
Q  42 caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgga 141  Q
    ||||||||||||| ||||  ||| ||||  |||  | |||||| ||||||  ||||| | || ||||||||| |||||||||||||||||| | ||||||    
T  34667662 caacaagggtaaaattgaataaaaaatatcaaacattctaaaagatcaaatattttgaattaaagttgaagtcctaaaacatcaaaagaaacgaaatgga 34667761  T
Q  142 g 142  Q
    |    
T  34667762 g 34667762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 183 - 364
Target Start/End: Complemental strand, 24234770 - 24234585
Alignment:
Q  183 caaatacgtgttagatttaaactctcttatgaccccgatgccaagtgctaacatcatacttttgnnnnnnncaacta---ttataactgtatcgatagaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||   ||||||||||||||||||||    
T  24234770 caaatacgtgttagatttaaactctcttatgaccccgatgccaagtgccaacatcatacttttgtttttttcaactagatttataactgtatcgatagaa 24234671  T
Q  280 ttttaagcatattacgacttttacaacaactttggtgagtgataattagggttataca-ttcttgtattaacggactcttaatatt 364  Q
    ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24234670 ttccaagcgtattacgacttttacaacaactttggtgagtgataattagggttatacacttcttgtattaacggactcttaatatt 24234585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 12399093 - 12399223
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  12399093 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 12399192  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  12399193 aaacatcaaaagaaaaggaatggagggagta 12399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 34208668 - 34208538
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  34208668 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 34208569  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  34208568 aaacatcaaaagaaaaggaatggagggagta 34208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 29875084 - 29874954
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  29875084 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaatatagttgaagttcta 29874985  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||||||||||||    
T  29874984 aaacatcaaaagaaaaagaatggagggagta 29874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 23090428 - 23090298
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||    
T  23090428 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaatacagttgaagttcta 23090329  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  23090328 aaacatcaaaagaaaaggaatggagggagta 23090298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4145824 - 4145694
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  4145824 actttaatagtttattgtgttttccaacaagggtaaacttaagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttaaagttcta 4145725  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||||    
T  4145724 aaacatcaaaagaaaaggaatggagcgagta 4145694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4695309 - 4695439
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  4695309 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgaaatatagttgaagttcta 4695408  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||| |||||||||||||||||| ||||||||    
T  4695409 aaaaatcaaaagaaaaggaatgaagggagta 4695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 3077727 - 3077596
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||| |||||    
T  3077727 actttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataacaaattcactaaaacatcaaaagttttaaaatatagttgaaattcta 3077628  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||| |||||||||||||||    
T  3077627 aaacatcaaaagaaaatgaatggagggagtat 3077596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 42757957 - 42758072
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  42757957 actttaatagtttatcgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaaaatagttgaagttcta 42758056  T
Q  118 aaacatcaaaagaaaa 133  Q
    |||||| |||| ||||    
T  42758057 aaacataaaaaaaaaa 42758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 12096365 - 12096466
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatt-tactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 131  Q
    |||||||| ||||||| ||| ||||||||||| |||| |||| | || |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12096365 tgtgtttttcaacaagagtacacttgagaaaagaatattaaaatatattaaaacatcaaatgttttggaatatagttgaagtcctaaaacatcaaaagaa 12096464  T
Q  132 aa 133  Q
    ||    
T  12096465 aa 12096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 41610579 - 41610694
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    ||||||||  |||||||||||| |||   ||| | || |||| || ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  41610579 tgtgttttttaacaagggtaaaattggataaaaagtattaaaatttctaaaacatcaaaagttttggaataaagtttaagttctaaaacatcaaaagaaa 41610678  T
Q  133 aggaatggagggagta 148  Q
    || ||||||| |||||    
T  41610679 agaaatggagagagta 41610694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 42793109 - 42793040
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||    
T  42793109 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagtgagta 42793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 22646056 - 22646121
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaa 83  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  22646056 actttaatagtttatggtgtttttcaacaaggttaaacttgagaaaacaataataaattcactaaa 22646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 4434847 - 4434783
Alignment:
Q  81 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||  | ||| |||| ||||||||| |||||||||||||||||||| ||||||||||    
T  4434847 aaaacatcaaatatcttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggaggga 4434783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 29875198 - 29875232
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  29875198 ctaaaacatcaaaagaaaaggaatggagggagtat 29875232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 42793562 - 42793596
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  42793562 ctaaaacatcaaaagaaaaggaatggagggagtat 42793596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 12398979 - 12398946
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  12398979 ctaaaacatcaaaagaaaaggaatggagggagta 12398946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 23090543 - 23090576
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||||    
T  23090543 taaaacatcaaaagaaaaggaatggagggagtat 23090576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 41610405 - 41610372
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||||    
T  41610405 taaaacatcaaaagaaaaggaatggagggagtat 41610372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 42757838 - 42757805
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  42757838 ctaaaacatcaaaagaaaaggaatggagggagta 42757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 19574795 - 19574685
Alignment:
Q  37 ttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaagga 136  Q
    |||| |||||||||| | |||| ||||| |||| ||||| || |||||||| |||  ||||| ||| || ||||||| |||||||||||||||| ||  |    
T  19574795 tttttcaacaagggtgaccttgggaaaa-aatattaaatatattaaaacattaaatattttgaaatttaattgaagtcctaaaacatcaaaagacaa-aa 19574698  T
Q  137 atggagggagtat 149  Q
    |||||||||||||    
T  19574697 atggagggagtat 19574685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 594328 - 594362
Alignment:
Q  99 gaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||||||||||||||| ||||||||||||||||||    
T  594328 gaatatagttgaagttttaaaacatcaaaagaaaa 594362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 8718094 - 8718028
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||||  ||||| |||| ||||||| |  ||||| ||||||||||||| ||||||||||    
T  8718094 ctaaaacatcaaatattttgaaataaagttgaaatcttaaaatatcaaaagaaaagaaatggaggga 8718028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 22528117 - 22528023
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaa 127  Q
    |||||||| |||||| |||||| |||  | || | || ||||| |||||||||||||||  ||||||| |||| ||||||| |||||| ||||||    
T  22528117 tgtgtttttcaacaaaggtaaatttggaataaaattattaaatgtactaaaacatcaaatattttggagtataattgaagtcctaaaatatcaaa 22528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 34208782 - 34208816
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||| ||||||||||||||||||||    
T  34208782 ctaaaacatcaaaaaaaaaggaatggagggagtat 34208816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 33837876 - 33838007
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33837876 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 33837975  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  33837976 aaacatcaaaagaaaaggaatggagggagtat 33838007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 2508943 - 2509073
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2508943 actttaatagtttactgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 2509042  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  2509043 aaacatcaaaagaaaaggaatggagggagta 2509073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 28379077 - 28378947
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28379077 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 28378978  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||  |||||||||||||    
T  28378977 aaacatcaaaagaaaaataatggagggagta 28378947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 13469652 - 13469777
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13469652 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaattataaatttactaaaatatcaaaagttttggaatatagttgaagttcta 13469751  T
Q  118 aaacatcaaaagaaaaggaatggagg 143  Q
    ||||||||||||||||||||||||||    
T  13469752 aaacatcaaaagaaaaggaatggagg 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 45334423 - 45334553
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  45334423 actttaatagtttattgtgttttccaacaagggtaaacttgaaaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttaaagttcta 45334522  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||    
T  45334523 aaacatcaaaagaaaaggaatggagggagta 45334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 25106341 - 25106210
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25106341 actttaatagtttattgtgttttccatcaagggtaaacttgaaaaaacaatcataaattcactaaaacatcaaaaattttggaatatagttgaagttcta 25106242  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||| ||||||    
T  25106241 aaacatcaaaagaaaaggaatggagagagtat 25106210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 38495619 - 38495749
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||    
T  38495619 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcaccaaaacatcaaaaattttagaatatagttgaagttcta 38495718  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||| ||||||| ||||||||| ||||    
T  38495719 aaacatcacaagaaaaagaatggaggaagta 38495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 27793345 - 27793469
Alignment:
Q  25 tagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 124  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  27793345 tagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacattaaaagttttggaatatagttgaagatctaaaacatc 27793444  T
Q  125 aaaagaaaaggaatggagggagtat 149  Q
    ||||||||| ||||||| |||||||    
T  27793445 aaaagaaaatgaatggaaggagtat 27793469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 9740115 - 9739984
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||  ||||||||||    
T  9740115 actttaatagtttattgtgtttttcaacaaggataaacttgagaaagcaataataaattcagtaaaacatcaaaagttttgaaatatacatgaagttcta 9740016  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  9740015 aaacatcaaaagaaaaggaatggagggagtat 9739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 32183630 - 32183760
Alignment:
Q  21 ttaatagtttat--tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaa 118  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||  |||||||||||||||||||||||||    
T  32183630 ttaatagtttatggtgtgttttccaacaagggtaaacttgggaaaaaaatattaaatatactaaaacatcaaatattttggaatatagttgaagttctaa 32183729  T
Q  119 aacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||  |||| |||||||||    
T  32183730 aacatcaaaagaaaaaaaatgaagggagtat 32183760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 2626385 - 2626472
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaac-aataataaatttactaaaacatcaaaagttttggaatat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  2626385 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaaataataaattcactaaaacatcaaaagttttggaatat 2626472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 27024502 - 27024432
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  27024502 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagtat 27024432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 25978969 - 25979037
Alignment:
Q  81 aaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||| |||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  25978969 aaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaatggagggagtat 25979037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 8235276 - 8235159
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||||  ||| |||| ||||  |  |||||||||||| |||||| |||| | ||||||| ||||||||||||||||||    
T  8235276 tgtgtttttcaacaagggtaaaattgaagaaa-aatattaaaaatcttaaaacatcaaatgttttgaaataaaattgaagtcctaaaacatcaaaagaaa 8235178  T
Q  133 aggaatggagggagtatca 151  Q
    |  ||||||||||||||||    
T  8235177 ataaatggagggagtatca 8235159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 3203413 - 3203492
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 113  Q
    |||||||| |||||| | |||||||||||||| |||| ||||| |||||||||||||||  ||||  ||||||||||||||    
T  3203413 tgtgtttttcaacaaagataaacttgagaaaa-aatattaaatatactaaaacatcaaatattttaaaatatagttgaagt 3203492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 2626667 - 2626714
Alignment:
Q  86 atcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||||    
T  2626667 atcaaaagttttggaatatagttgaagttctaaaatataaaaaaaaaa 2626714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 27027655 - 27027689
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  27027655 ctaaaacatcaaaagaaaaggaatggagggagtat 27027689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 25106455 - 25106488
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  25106455 ctaaaacatcaaaagaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 28379191 - 28379224
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  28379191 ctaaaacatcaaaagaaaaggaatggagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 33837762 - 33837729
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  33837762 ctaaaacatcaaaagaaaaggaatggagggagta 33837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 45334309 - 45334276
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  45334309 ctaaaacatcaaaagaaaaggaatggagggagta 45334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 9740231 - 9740263
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  9740231 taaaacatcaaaagaaaaggaatggagggagta 9740263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 13469540 - 13469507
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||| |||||||    
T  13469540 taaaacatcaaaagaaaaggaatggaaggagtat 13469507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 38495505 - 38495472
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  38495505 ctaaaacatcaaaagaaaatgaatggagggagta 38495472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 27312263 - 27312394
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  27312263 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaatatagttgaagttcta 27312362  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  27312363 aaacatcaaaagaaaaggaatggagggagtat 27312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 32274564 - 32274433
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  32274564 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 32274465  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  32274464 aaacatcaaaagaaaaggaatggagggagtat 32274433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 5004012 - 5003889
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  5004012 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttcta 5003913  T
Q  118 aaacatcaaaagaaaaggaatgga 141  Q
    ||||||||||| |||| |||||||    
T  5003912 aaacatcaaaaaaaaatgaatgga 5003889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 8504849 - 8504988
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  8504849 actttaatagtttattgtgtttttcaacaagggtaaacctgagaaaataataataaattcactaaaacatcaaaagttttgaaatatagttgaagttcta 8504948  T
Q  118 aaacatcaaaagaaaaggaatggagggagtatcaaatagt 157  Q
    |||||||||||||||| |||||||||||| ||||| ||||    
T  8504949 aaacatcaaaagaaaatgaatggagggagcatcaattagt 8504988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 12174802 - 12174699
Alignment:
Q  46 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  12174802 aagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatttaaagttctaaaacattaaaagaaaaggaatggaggga 12174703  T
Q  146 gtat 149  Q
    ||||    
T  12174702 gtat 12174699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 29452691 - 29452821
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaa-taataaatttactaaaacatcaaaagttttggaatatagttgaagttctaa 118  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |  ||| ||||||||||||||||||||    
T  29452691 tttaatagtttatggtgttttccaacaagtgtaaacttgagaaaacaagtaataaattcactaaaacatcaagaaatttagaatatagttgaagttctaa 29452790  T
Q  119 aacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||| |||||||| ||||||||||||||    
T  29452791 aacatcagaagaaaagaaatggagggagtat 29452821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 18742062 - 18741947
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||    
T  18742062 tgtgtttttcaacaagggtaaatttgagaatacaatattaaatatactaaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaa 18741963  T
Q  133 aggaatggagggagta 148  Q
    || |||||||||||||    
T  18741962 agaaatggagggagta 18741947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 31171139 - 31171267
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 119  Q
    ||||||||||||  ||||||||||| || | |||||||||||||||||||||||||| |||| |||||| || ||||||||||| | ||||| |||||||    
T  31171139 tttaatagtttaaggtgttttccaataaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatacatttgaatttctaaa 31171238  T
Q  120 acatcaaaagaaaaggaatggagggagta 148  Q
     |||||||||||||| |||||||||||||    
T  31171239 tcatcaaaagaaaagaaatggagggagta 31171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 7156413 - 7156503
Alignment:
Q  59 agaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  7156413 agaaaacaataataaattcactaaaacatctaaagttttggaatatagttgattgtctaaaacatcaaaagaaaagaaatggagggagtat 7156503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 2543211 - 2543142
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacat 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2543211 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacat 2543142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 29302500 - 29302548
Alignment:
Q  100 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302500 aatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 29302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 27312147 - 27312113
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  27312147 ctaaaacatcaaaagaaaaggaatggagggagtat 27312113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 8504766 - 8504733
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  8504766 ctaaaacatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 2543325 - 2543359
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||| |||||||||||||||    
T  2543325 ctaaaacatcaaaagaaaacgaatggagggagtat 2543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 32274678 - 32274711
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  32274678 ctaaaacatcaaaagaaaatgaatggagggagta 32274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 18742191 - 18742223
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| |||||||||||||    
T  18742191 taaaacatcaaaagaaaagaaatggagggagta 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 4817396 - 4817268
Alignment:
Q  21 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4817396 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaatgataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaa 4817297  T
Q  121 catcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||    
T  4817296 catcaaaagaaaaggaatggagggagtat 4817268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 47669249 - 47669118
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  47669249 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaatatagttgaagttcta 47669150  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  47669149 aaacatcaaaagaaaaggaatggagggagtat 47669118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 46220389 - 46220259
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  46220389 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 46220290  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||| |||||||||    
T  46220289 aaacatcaaaagaaaaggaatagagggagta 46220259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 18126978 - 18126851
Alignment:
Q  21 ttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaa 120  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18126978 ttaatagtttgttgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttctaaaa 18126879  T
Q  121 catcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||    
T  18126878 catcaaaagaaaaggaatggagggagta 18126851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 10737848 - 10737978
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  10737848 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttcta 10737947  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||| ||||||||||||||| ||||||||    
T  10737948 aaacattaaaagaaaaggaatgaagggagta 10737978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 9831631 - 9831503
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  9831631 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaataataacaaattcactaaaacatcaaaagttttggaatatagttgaaattctaaa 9831532  T
Q  120 acatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||    
T  9831531 acatcaaaagaaaaggaatggagggagta 9831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 4055614 - 4055483
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||| |||  |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  4055614 actttaacagtgaattgtgttttccaataagggtaaacttgagaaaacaataattaattcactaaaacatcaaaagttttggaatatagttgaagttcta 4055515  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  4055514 aaacatcaaaagaaaaggaatggagggagtat 4055483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 48564947 - 48564817
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||    
T  48564947 actttaatagtttattgtgttttccatcaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaatttttggaatatagttgaagtttta 48564848  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||| ||||||||| ||||||||||||||    
T  48564847 aaacatc-aaagaaaagtaatggagggagtat 48564817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 3384742 - 3384870
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  | |||||||| ||||||    
T  3384742 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttg--aaatagttgaggttcta 3384839  T
Q  118 aaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||| ||||| ||||||||    
T  3384840 aaacatcaaaagaaaaagaatgaagggagta 3384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 8889572 - 8889457
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8889572 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttcta 8889473  T
Q  118 aaacatcaaaagaaaa 133  Q
    |||||| |||| ||||    
T  8889472 aaacataaaaaaaaaa 8889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 7414337 - 7414208
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||  ||||||||||||||||||    
T  7414337 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttaaaatatagttgaagttcta 7414238  T
Q  118 aaacatcaaaagaaaaggaatggagggagt 147  Q
    ||||||||||| |||| |||||||||||||    
T  7414237 aaacatcaaaaaaaaatgaatggagggagt 7414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 1236205 - 1236307
Alignment:
Q  46 aagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  1236205 aagggtaaacttgagaaaacaataataaattcactaaaccatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaatgaatggaggga 1236304  T
Q  146 gta 148  Q
    |||    
T  1236305 gta 1236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 1749521 - 1749601
Alignment:
Q  69 aataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| |||||    
T  1749521 aataaattcactaaaacatcaaaagttttggtatataattaaagttctaaaacatcaaaagaaaaggaatagaggaagtat 1749601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 39241282 - 39241172
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaa-cttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttct 116  Q
    ||||||||||||||| ||||||| ||||||| ||||| ||||| | |||||||||||||| ||| ||||| ||||||||||| |||||||||||| ||||    
T  39241282 actttaatagtttatggtgtttttcaacaagagtaaaacttgatacaacaataataaattcactgaaacaacaaaagttttgaaatatagttgaa-ttct 39241184  T
Q  117 aaaacatcaaaa 128  Q
    ||||||| ||||    
T  39241183 aaaacattaaaa 39241172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 33020275 - 33020206
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||    
T  33020275 ctaaaacatcaaaagttttggaaaaaagtttaagctctaaaacatcaaaagaaaaggaatggagggagta 33020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 26842552 - 26842462
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatca 125  Q
    |||||||| |||||||| ||||||||| ||||  ||| ||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  26842552 tgtgtttttcaacaaggataaacttgaaaaaa--atattaaatatactaaaacatcaaatattttgaaatatagttgaagttctaaaacatca 26842462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 33846820 - 33846941
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 131  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||    
T  33846820 tgtgttttttaacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaa 33846919  T
Q  132 aaggaatggagggagtatcaaat 154  Q
    ||  |||||||||||||||||||    
T  33846920 aa-aaatggagggagtatcaaat 33846941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 33947158 - 33947037
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataat-aaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaa 131  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||| |||| ||||||||||  ||||  |||| | |||||||  ||||||||||||||||    
T  33947158 tgtgttttttaacaagggtaaacttgaggaaaaaaaaattaaatatactgaaacatcaaatattttaaaatacacttgaagtcttaaaacatcaaaagaa 33947059  T
Q  132 aaggaatggagggagtatcaaat 154  Q
    ||  |||||||||||||||||||    
T  33947058 aa-aaatggagggagtatcaaat 33947037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 10737734 - 10737698
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtatca 151  Q
    |||||||||||||||||||||||||||||||||||||    
T  10737734 ctaaaacatcaaaagaaaaggaatggagggagtatca 10737698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 46220503 - 46220539
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtatca 151  Q
    |||||||||||||||||||||||||||||||||||||    
T  46220503 ctaaaacatcaaaagaaaaggaatggagggagtatca 46220539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 37875920 - 37875849
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaa 91  Q
    ||||||||| |  ||| |||| |||||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  37875920 tttaatagtatggtgtatttttcaacaaggataaacttgagaaaacaacattaaatatactaaaacatcaaa 37875849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 47669363 - 47669396
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  47669363 ctaaaacatcaaaagaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 1236103 - 1236071
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagt 147  Q
    |||||||||||||||||||||||||||||||||    
T  1236103 ctaaaacatcaaaagaaaaggaatggagggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 48565063 - 48565095
Alignment:
Q  117 aaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||    
T  48565063 aaaacatcaaaagaaaaggaatggagggagtat 48565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 49112439 - 49112535
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    |||||||| ||||||||||||| ||   ||||||||  ||||| |||||||||||||||  ||||  ||||||||| |||||    ||||||||||||||    
T  49112439 tgtgtttttcaacaagggtaaatttagaaaaacaatgttaaatatactaaaacatcaaatattttaaaatatagttaaagtt----aacatcaaaagaaa 49112534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 9831747 - 9831777
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggaggga 145  Q
    |||||||||||||||||||||||||||||||    
T  9831747 ctaaaacatcaaaagaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 33023428 - 33023462
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||| |||||||||||||||||||||||||||    
T  33023428 ctaaaacgtcaaaagaaaaggaatggagggagtat 33023462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 37875760 - 37875726
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||| ||||||||||||||    
T  37875760 ctaaaacatcaaaagaaaagaaatggagggagtat 37875726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 8889687 - 8889720
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||| |||||||||||||||||||    
T  8889687 ctaaaacatcaaaataaaaggaatggagggagta 8889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 15233885 - 15233757
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  15233885 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatatagttgaagttcta 15233786  T
Q  118 aaacatcaaaagaaaaggaatggagggag 146  Q
    ||||||||||||||||||||| |||||||    
T  15233785 aaacatcaaaagaaaaggaatagagggag 15233757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 43040996 - 43041127
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  43040996 actttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagtttta 43041095  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||    
T  43041096 aaacatcaaaagaaaaggaatggagggagtat 43041127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 35793054 - 35793184
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35793054 actttaatagtttattgtgttttccaacaagggtaaacttga-aaaacaataataaattctctaaaacatcaaaagttttggaatatagttgaagttcta 35793152  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||| |||||||||||||||    
T  35793153 aaacatcaaaagaaaaagaatggagggagtat 35793184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 41252545 - 41252412
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  41252545 actttaatagtttattgtattttccaacaaggataaacttgagaacacaataataaattcactaaaacatcaaaagttttggaatatatttgaagttcta 41252446  T
Q  118 aaacatcaaaagaaaaggaatggagggagtatca 151  Q
    |||||| |||||||||||||||||||||||||||    
T  41252445 aaacataaaaagaaaaggaatggagggagtatca 41252412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 31296213 - 31296082
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  31296213 actttaatagtttattgtgtttttcaacaaaggtaaatttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttgaagttcta 31296114  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||| ||||||| |||||||    
T  31296113 aaacatcaaaagaaaaagaatggaaggagtat 31296082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 44104699 - 44104833
Alignment:
Q  21 ttaatagtttattgtgttttccaacaa-------gggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagt 113  Q
    |||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44104699 ttaatagtttattgtgttttccaacaatttataagggtaaacttgagaaaataataataaattcactaaaacatcaaaagttttgaaatatagttgaagt 44104798  T
Q  114 tctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||| ||||||||||    
T  44104799 tctaaaacatcaaaagaaaaggaacggagggagta 44104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 41643024 - 41642891
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaa--tatagttgaagttc 115  Q
    ||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||| |||    
T  41643024 actttaatagtttatggtgttttccagaaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatagttgaaattc 41642925  T
Q  116 t-aaaacatcaaaagaaaaggaatggagggagta 148  Q
    | |||||||||||||||||| |||||||||||||    
T  41642924 taaaaacatcaaaagaaaagaaatggagggagta 41642891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 31903527 - 31903641
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  31903527 actttaatagtttatggtgttttccaataagggtaaact-gataaaacaataataaatttactaaaacatcaaaaaatttggaatatatttgaagttcta 31903625  T
Q  118 aaacatcaaaagaaaa 133  Q
    ||||||||||| ||||    
T  31903626 aaacatcaaaaaaaaa 31903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 10118660 - 10118729
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||    
T  10118660 ctaaaacatcaaaagttttggaataaagtttaagctctaaaatatcaaaagaaaaggaatggagggagta 10118729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 21727801 - 21727684
Alignment:
Q  19 ctttaatagttt-attgtgttttc--caacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttc 115  Q
    |||||||||||| ||||||||||   ||||||||||||| ||| | ||| |||| ||  | ||| |||||||||||  ||||| ||||||||||||||||    
T  21727801 ctttaatagttttattgtgtttttttcaacaagggtaaatttggggaaaaaatattagttataccaaaacatcaaatattttgaaatatagttgaagttc 21727702  T
Q  116 taaaacatcaaaagaaaa 133  Q
    ||||||||||||||||||    
T  21727701 taaaacatcaaaagaaaa 21727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 10112372 - 10112338
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||||||||||||||||||||    
T  10112372 ctaaaacatcaaaagaaaaggaatggagggagtat 10112338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 36963200 - 36963130
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||  ||||| |||| |||| || ||||||||||| |||||||||||||| ||| ||||||    
T  36963200 ctaaaacatcaaattttttgaaataaagtttaaattctaaaacattaaaagaaaaggaatagagcgagtat 36963130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 15233999 - 15234032
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  15233999 ctaaaacatcaaaagaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 43040882 - 43040849
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||||||||||||||||||    
T  43040882 ctaaaacatcaaaagaaaaggaatggagggagta 43040849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 44104578 - 44104546
Alignment:
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||    
T  44104578 taaaacatcaaaagaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 45590872 - 45590741
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  45590872 actttaatagtttattgtgttttccaacaaaggtaaacttgataaaacaataatgaattcactaaaacatcaaaagttttagaatatagttgaagttcta 45590773  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||| |||||||||||||||    
T  45590772 aaacatcaaaagaaaatgaatggagggagtat 45590741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 34334462 - 34334342
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34334462 actttaatagtttattgtgtttttcaacaagggtaaacttgagaagacaataataaattcactaaagcatcaaaagttttggaatatagttgaagttcta 34334363  T
Q  118 aaacatcaaaagaaaaggaat 138  Q
    |||||||||||||||||||||    
T  34334362 aaacatcaaaagaaaaggaat 34334342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 8955923 - 8956054
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  8955923 actttaataatttattgtgttttccaataagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttgtaatatagttgaagttcta 8956022  T
Q  118 aaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||| ||||||||||||||||||||    
T  8956023 aaacatcaaaaaaaaaggaatggagggagtat 8956054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 33288564 - 33288683
Alignment:
Q  30 tattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaag 129  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  33288564 tattgtgttttccaacatgggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatataattgaagttctaaaatatcaaaag 33288663  T
Q  130 aaaaggaatggagggagtat 149  Q
    ||||| ||||||||||||||    
T  33288664 aaaagaaatggagggagtat 33288683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 49162231 - 49162108
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||     
T  49162231 actttaatagtttatggtgttttccaacaagg-taaaattgagaaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctg 49162133  T
Q  118 aaacatcaaaagaaaaggaatggag 142  Q
    |||||||||||||||| ||||||||    
T  49162132 aaacatcaaaagaaaatgaatggag 49162108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 30469353 - 30469446
Alignment:
Q  56 ttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30469353 ttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatgaagggagtat 30469446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 39482002 - 39481906
Alignment:
Q  49 ggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggaggga 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  39482002 ggtaaacctgagaaaacaataataaatttactaaaacatcaaaagttttggaaaatagttgaagttctaaaacatcaaaagaaaagaaatggaggga 39481906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 18835837 - 18835705
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattt--actaaaacatcaaaagttttggaatatagttgaagttc 115  Q
    |||||||||||||||  ||||||| ||||||| |||| ||||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||||||    
T  18835837 actttaatagtttatgatgttttctaacaaggataaatttgagaaaacaataatatatattcactaaaacatcgaaagttttggaatatagttgaagttc 18835738  T
Q  116 taaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||  |||| ||||||||    
T  18835737 taaaacatcaaaagaaaataaatgaagggagta 18835705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 50774207 - 50774325
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaa-----catcaaaagttttggaatatagttgaagtt 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||      ||||||||||||| ||||||||| |||||    
T  50774207 tttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaatactgtatcaaaagttttgaaatatagttaaagtt 50774306  T
Q  115 ctaaaacatcaaaagaaaa 133  Q
    |||||||||||||| ||||    
T  50774307 ctaaaacatcaaaaaaaaa 50774325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 19256255 - 19256185
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  19256255 ctaaaacatcaaaagttttggaataaagtttaagctctaaaacatcaaaagaaaaggaatggagggagtat 19256185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 26025685 - 26025801
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaag-aa 131  Q
    |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||  |||||  |||||||||||||||||||| ||||||||||||||| ||    
T  26025685 tgtgtttttcaacaagggtaaacttgggaaaa-aatattaaatatactaaaatgtcaaatattttggaatatagttgaagtcctaaaacatcaaaagaaa 26025783  T
Q  132 aaggaatggagggagtat 149  Q
    ||  ||||||||||||||    
T  26025784 aaaaaatggagggagtat 26025801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 36016329 - 36016278
Alignment:
Q  98 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016329 ggaatatagttgaagttctaaaacatcaaaagaaaaggaatggagggagtat 36016278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 36968407 - 36968353
Alignment:
Q  79 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaa 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36968407 ctaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaaaaaaa 36968353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 36971176 - 36971115
Alignment:
Q  20 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaa 82  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||    
T  36971176 tttaatagtttattgtgttttccaacaa-ggtaaacttcagaaaacaataataaattcactaa 36971115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 33109063 - 33109163
Alignment:
Q  33 tgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaa 132  Q
    ||||||||  ||||||| ||||||| |||||| |||| ||||| ||||||||||||||   ||||  |||||||||||||| ||||||||| ||||||||    
T  33109063 tgtgttttttaacaaggataaacttaagaaaaaaatattaaatatactaaaacatcaattattttaaaatatagttgaagtcctaaaacattaaaagaaa 33109162  T
Q  133 a 133  Q
    |    
T  33109163 a 33109163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 19257103 - 19257137
Alignment:
Q  114 tctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    |||||||||||||||||||||||||||||||||||    
T  19257103 tctaaaacatcaaaagaaaaggaatggagggagta 19257137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 8955809 - 8955774
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtatc 150  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8955809 ctaaaacatcaaaagaaaaggaatggagggaatatc 8955774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 49162332 - 49162366
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtat 149  Q
    |||||||||||||||||| ||||||||||||||||    
T  49162332 ctaaaacatcaaaagaaagggaatggagggagtat 49162366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 45590986 - 45591019
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagta 148  Q
    ||||||||||||||||||| ||||||||||||||    
T  45590986 ctaaaacatcaaaagaaaatgaatggagggagta 45591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 39482106 - 39482138
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagt 147  Q
    |||||||||||||||||||| ||||||||||||    
T  39482106 ctaaaacatcaaaagaaaagaaatggagggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 44750 - 44618
Alignment:
Q  18 actttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaatttactaaaacatcaaaagttttggaatatagttgaagttcta 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||     
T  44750 actttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacctcaaaagttttggaatatagttgaagttctc 44651  T
Q  118 aaacatca-aaagaaaaggaatggagggagtat 149  Q
    |||||||| |||||||||||||| |||||||||    
T  44650 aaacatcagaaagaaaaggaatgaagggagtat 44618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 44862 - 44902
Alignment:
Q  115 ctaaaacatcaaaagaaaaggaatggagggagtatcaaata 155  Q
    ||||||||||||||||||||||||| || |||||| |||||    
T  44862 ctaaaacatcaaaagaaaaggaatgtagagagtattaaata 44902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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