View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3764_high_2 (Length: 627)

Name: NF3764_high_2
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3764_high_2
NF3764_high_2
[»] chr4 (20 HSPs)
chr4 (1-613)||(30032832-30033440)
chr4 (277-495)||(30049046-30049264)
chr4 (277-495)||(30063387-30063605)
chr4 (205-480)||(30229172-30229446)
chr4 (288-480)||(30219711-30219903)
chr4 (534-607)||(20610763-20610837)
chr4 (187-256)||(30049303-30049372)
chr4 (534-607)||(24039911-24039982)
chr4 (205-256)||(30063644-30063695)
chr4 (542-607)||(56865-56931)
chr4 (529-588)||(55677148-55677208)
chr4 (529-607)||(4419678-4419757)
chr4 (531-605)||(35230289-35230364)
chr4 (534-607)||(12585556-12585630)
chr4 (534-607)||(33359841-33359915)
chr4 (561-607)||(42432032-42432078)
chr4 (534-607)||(49039442-49039516)
chr4 (529-605)||(49743388-49743465)
chr4 (561-605)||(36008301-36008345)
chr4 (561-605)||(56531261-56531305)
[»] chr2 (19 HSPs)
chr2 (531-607)||(4529757-4529834)
chr2 (534-607)||(14307691-14307765)
chr2 (531-607)||(36413784-36413861)
chr2 (529-607)||(37065426-37065505)
chr2 (529-606)||(18065279-18065357)
chr2 (534-607)||(23663995-23664067)
chr2 (531-580)||(44240084-44240133)
chr2 (534-607)||(10602029-10602104)
chr2 (534-607)||(1244593-1244667)
chr2 (534-587)||(12206542-12206596)
chr2 (534-607)||(25406647-25406721)
chr2 (529-607)||(26975291-26975369)
chr2 (534-587)||(32256180-32256234)
chr2 (534-607)||(37123210-37123284)
chr2 (534-607)||(39334878-39334952)
chr2 (532-605)||(407505-407578)
chr2 (562-602)||(10767016-10767056)
chr2 (561-605)||(11133102-11133146)
chr2 (48-100)||(26767760-26767812)
[»] scaffold0421 (2 HSPs)
scaffold0421 (334-398)||(13769-13833)
scaffold0421 (205-254)||(13680-13729)
[»] chr5 (10 HSPs)
chr5 (534-607)||(28537159-28537233)
chr5 (534-606)||(27006365-27006438)
chr5 (531-607)||(41405082-41405159)
chr5 (532-607)||(32252914-32252990)
chr5 (534-607)||(31556842-31556916)
chr5 (534-607)||(38040290-38040363)
chr5 (534-608)||(42260717-42260792)
chr5 (529-607)||(42553133-42553211)
chr5 (534-580)||(31280377-31280423)
chr5 (561-605)||(18872547-18872591)
[»] chr1 (21 HSPs)
chr1 (534-607)||(9768806-9768880)
chr1 (530-601)||(24889170-24889242)
chr1 (534-607)||(2903024-2903098)
chr1 (534-607)||(12553217-12553292)
chr1 (534-607)||(18003840-18003914)
chr1 (529-607)||(18646712-18646789)
chr1 (534-587)||(41677104-41677158)
chr1 (534-607)||(50199473-50199547)
chr1 (529-605)||(23750176-23750253)
chr1 (534-593)||(33844655-33844715)
chr1 (534-593)||(33949263-33949323)
chr1 (568-607)||(42908795-42908834)
chr1 (534-607)||(1721164-1721238)
chr1 (534-607)||(3341733-3341807)
chr1 (534-607)||(11238025-11238099)
chr1 (534-607)||(40454169-40454242)
chr1 (529-607)||(7015678-7015758)
chr1 (534-602)||(41182803-41182871)
chr1 (561-605)||(11405482-11405526)
chr1 (534-605)||(31965538-31965610)
chr1 (536-607)||(52961081-52961153)
[»] chr7 (9 HSPs)
chr7 (529-607)||(44409225-44409303)
chr7 (534-607)||(10020466-10020540)
chr7 (537-607)||(35195867-35195938)
chr7 (528-605)||(7162659-7162737)
chr7 (548-605)||(24304294-24304352)
chr7 (534-606)||(39524713-39524785)
chr7 (529-580)||(3246481-3246533)
chr7 (529-607)||(11808062-11808142)
chr7 (529-607)||(16814721-16814800)
[»] chr3 (19 HSPs)
chr3 (529-607)||(6054217-6054296)
chr3 (529-609)||(28951888-28951969)
chr3 (534-606)||(32080080-32080153)
chr3 (529-605)||(36842188-36842265)
chr3 (542-605)||(42665930-42665994)
chr3 (528-607)||(55318041-55318121)
chr3 (529-607)||(4045626-4045705)
chr3 (534-607)||(24160525-24160599)
chr3 (534-607)||(794006-794079)
chr3 (529-607)||(3461715-3461795)
chr3 (534-603)||(22432908-22432978)
chr3 (534-607)||(23237386-23237460)
chr3 (534-607)||(51017814-51017887)
chr3 (531-607)||(31902200-31902276)
chr3 (534-607)||(44592024-44592097)
chr3 (534-593)||(21248987-21249047)
chr3 (552-607)||(26583125-26583181)
chr3 (561-605)||(32508819-32508863)
chr3 (561-605)||(42271038-42271082)
[»] chr6 (6 HSPs)
chr6 (561-607)||(7374075-7374121)
chr6 (534-607)||(30833041-30833115)
chr6 (534-607)||(34524899-34524973)
chr6 (534-607)||(14949016-14949091)
chr6 (534-607)||(1488112-1488186)
chr6 (534-607)||(19680245-19680319)
[»] chr8 (8 HSPs)
chr8 (543-599)||(574257-574313)
chr8 (534-607)||(7345452-7345526)
chr8 (534-607)||(22847259-22847333)
chr8 (534-607)||(25470843-25470917)
chr8 (548-605)||(35301174-35301232)
chr8 (572-605)||(33570465-33570498)
chr8 (557-605)||(13106391-13106439)
chr8 (561-605)||(43468730-43468774)
[»] scaffold0168 (1 HSPs)
scaffold0168 (534-607)||(34030-34104)


Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 30033440 - 30032832
Alignment:
Q  1 tgagttatgatcacagaaacacaattaattatgtttttactacggagaatgctagcaaatttctcttttaaacactatatctaatactcactcttttatt 100  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  30033440 tgagttatggtcacggaaacacaattaattatgtttttattacggagaatgctagcaaatttttcttttaaacactatctctaatactcactcttttatt 30033341  T
Q  101 agatgctctctcaaacacttactcttttcaacattcttttattgcctaannnnnnnnnnnngagggatattgcctaaaatatttgtttcaagtaacatac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  30033340 agatgctctctcaaacacttactcttttcaacattcttttattgcctaattttttttttttgagggatattgcctaaaatatttgtttcaagtaacatac 30033241  T
Q  201 ctccataaattatggtgccaccttagactttatgtagctaagtgtctaattgaagtgtcataaaatctctt-cacacacacatcagaccataatggacaa 299  Q
    ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30033240 ctctataaattatggtgccac-ttagactttatgtagccaagtgtctaattgaagtgtcataaaatctcttgcacacacacatcagaccataatggacaa 30033142  T
Q  300 gttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctggagtttgctatt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30033141 gttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctggagtttgctatt 30033042  T
Q  400 ccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggttacgttctatatctctctta 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  30033041 ccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggttacgttctatat--ctctta 30032944  T
Q  500 tgtattcttttataagtagtctatcatcagttaaaattcacc-tttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaac 598  Q
    ||||||||||||||||||||   | ||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30032943 tgtattcttttataagtagt---ttattggttaaaattcacctttttttaaagtgaataattgggtgttcggagttcgaaccccgatccatgcatataac 30032847  T
Q  599 aatgcatgtatttgg 613  Q
    ||||||||| |||||    
T  30032846 aatgcatgtctttgg 30032832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 277 - 495
Target Start/End: Complemental strand, 30049264 - 30049046
Alignment:
Q  277 acacatcagaccataatggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgttt 376  Q
    ||||| || |||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||    
T  30049264 acacaccacaccataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgttt 30049165  T
Q  377 ttggctttctggagtttgctattccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattat 476  Q
    ||| |||| |||| || ||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049164 ttgcctttttggaattagctattccatttgataattcattagctatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattat 30049065  T
Q  477 ggttacgttctatatctct 495  Q
    |||||| ||||||||||||    
T  30049064 ggttacattctatatctct 30049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 277 - 495
Target Start/End: Complemental strand, 30063605 - 30063387
Alignment:
Q  277 acacatcagaccataatggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgttt 376  Q
    ||||| || |||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||    
T  30063605 acacaccacaccataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgttt 30063506  T
Q  377 ttggctttctggagtttgctattccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattat 476  Q
    ||| |||| |||| || ||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30063505 ttgcctttttggaattagctattccatttgataattcattagctatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattat 30063406  T
Q  477 ggttacgttctatatctct 495  Q
    |||||| ||||||||||||    
T  30063405 ggttacattctatatctct 30063387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 205 - 480
Target Start/End: Complemental strand, 30229446 - 30229172
Alignment:
Q  205 ataaattatggtgccaccttagactttatgtagctaagtgtctaattgaagtgt--cataaaatctcttcacacacacatcagaccataatggacaagtt 302  Q
    |||||| ||||||| ||||| | ||||  |||||| |||||||| |||||||||  ||| ||||||||   | |||||| || | |||||||||||| ||    
T  30229446 ataaatcatggtgcaaccttgggcttttggtagctcagtgtctagttgaagtgttacatcaaatctct---ctcacacaccacagcataatggacaaatt 30229350  T
Q  303 ctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctggagtttgctattcca 402  Q
    || || |||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || ||||||    
T  30229349 ctttggagaagttcaagagccagtgagtcctcatggacaatatttcaacagctctgtgatgtgttcatatgtttttggctttctggaattagcgattcca 30229250  T
Q  403 tttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggtt 480  Q
    |||||||| ||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  30229249 tttgataattcattagctatacctttgctcaaagatgttttcatccctatcaacccacgcttctcctctatcatggtt 30229172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 288 - 480
Target Start/End: Original strand, 30219711 - 30219903
Alignment:
Q  288 cataatggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctg 387  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  30219711 cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg 30219810  T
Q  388 gagtttgctattccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggtt 480  Q
    || || ||||||||| ||||| ||||||    ||| |||||||| |||||||||||| | |||||||| ||||| |||||||| |||||||||    
T  30219811 gaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttccttcctatcaatccacgtttctcctctattatggtt 30219903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 20610837 - 20610763
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||| || |||||||| |||| ||| |||||||||||||||| ||| ||||| |||||||||||||    
T  20610837 aattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccggcccctgcatataacaatgcatgt 20610763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 30049372 - 30049303
Alignment:
Q  187 ttcaagtaacatacctccataaattatggtgccaccttagactttatgtagctaagtgtctaattgaagt 256  Q
    |||||||| ||||| |  |||||||||||||||||||||  ||||||||||| |||||||||| ||||||    
T  30049372 ttcaagtaccatacttgtataaattatggtgccaccttatgctttatgtagcaaagtgtctaactgaagt 30049303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 24039982 - 24039911
Alignment:
Q  534 aattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| || ||||||||| ||||||||||||||||   ||| |||||||||||||    
T  24039982 aattcacctttttcaaggtgaataagtgaggtgttcggggttcgaaccccgaccc---catataacaatgcatgt 24039911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 30063695 - 30063644
Alignment:
Q  205 ataaattatggtgccaccttagactttatgtagctaagtgtctaattgaagt 256  Q
    |||||||||||||||||||||  ||||||||||| |||||||||| ||||||    
T  30063695 ataaattatggtgccaccttatgctttatgtagcaaagtgtctaactgaagt 30063644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 56865 - 56931
Alignment:
Q  542 tttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||| |||||||| |||| |||||||||||||||| ||| ||| ||||| |||||||||||||    
T  56865 tttttcaaggtgaataaatggggtgttcggagttcgaactccggcccttgcatataacaatgcatgt 56931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 55677208 - 55677148
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgaccca 588  Q
    |||| ||||||| | ||||||||||||||| ||| |||| |||||||||||||||||||||    
T  55677208 gttagaattcacttatttcaaagtgaataagtggagtgtccggagttcgaaccccgaccca 55677148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 4419678 - 4419757
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||| |||||||| |||||||| || ||||||| | ||| |||||||| ||| ||||| |||||||||||||    
T  4419678 gttagaattcacttttttcaaggtgaataaatgaggtgttctgggtttgaaccccggcccctgcatataacaatgcatgt 4419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 605
Target Start/End: Original strand, 35230289 - 35230364
Alignment:
Q  531 taaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||||||| |||||| || ||||| |||| ||| ||  |||||||||||||||||||||| || ||||||||    
T  35230289 taaaattcacctatttcaaggtaaataagtggggtgtccgaggttcgaaccccgacccatgcatatagcaatgcat 35230364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 12585556 - 12585630
Alignment:
Q  534 aattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||  ||||||| || ||||||||| |||||||| ||| ||| | ||| |||||||||||||    
T  12585556 aattcacctttttcaagatgaataagtgaggtgttcggggttcgaactccggcccttacatataacaatgcatgt 12585630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 33359915 - 33359841
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| | |||||| | | ||||||||| |||||| ||||| |||||||| ||||    
T  33359915 aattcacctttttcaaggtgaataagtggggtgtccagggttcgaacctcgacccttgcatataacaatgaatgt 33359841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 607
Target Start/End: Complemental strand, 42432078 - 42432032
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||||||||| | || ||||| |||||||||||||    
T  42432078 gggtgttcggagttcgaaccccaatccctgcatataacaatgcatgt 42432032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 49039442 - 49039516
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| | |||||| ||| |||||||||||   || ||||| |||||||||||||    
T  49039442 aattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgt 49039516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 605
Target Start/End: Complemental strand, 49743465 - 49743388
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    ||||||||||||||||||||| || ||||| || ||||| ||| ||||||| |||| ||| ||||| ||| |||||||    
T  49743465 gttaaaattcacctttttcaaggtaaataagtgaggtgtccggggttcgaatcccggcccctgcatataataatgcat 49743388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 36008345 - 36008301
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||||| |||||||||||| ||| ||||| |||||||||||    
T  36008345 gggtgttcggggttcgaaccccggcccctgcatataacaatgcat 36008301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 56531261 - 56531305
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||| |||||||||||||||| ||| ||||| |||||||||||    
T  56531261 gggtgtccggagttcgaaccccggcccctgcatataacaatgcat 56531305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 4529757 - 4529834
Alignment:
Q  531 taaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| ||||| ||| |||||||||    
T  4529757 taaaattcacctttttcaaagtgaataagtggggtgttcggagttcgaactccgacccctgcatataataatgcatgt 4529834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 14307691 - 14307765
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||| ||||| ||||||||||| |||| ||||||| ||||||||| |||||| ||||| |||||||||||||    
T  14307691 aattcactttttttaaagtgaataagtggggtgttcggggttcgaacctcgacccctgcatataacaatgcatgt 14307765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 36413861 - 36413784
Alignment:
Q  531 taaaattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||||||||||||||| | |||||| | | |||||||| ||| ||| ||||| |||||||||||||    
T  36413861 taaaattcacctttttcaaagtgaataagtggggtgtccagggttcgaactccggcccctgcatataacaatgcatgt 36413784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 37065426 - 37065505
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||| ||||| || |||||| | || |||| ||||||||||||||||||||  ||||| |||||||||||||    
T  37065426 gttaaaattcacattttttaaggtgaattagtgaggtgatcggagttcgaaccccgaccactgcatataacaatgcatgt 37065505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 606
Target Start/End: Complemental strand, 18065357 - 18065279
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatg 606  Q
    |||||||||||| |||||||| |||||||| |  ||||||||| ||||||||| | |||| ||||| ||||||||||||    
T  18065357 gttaaaattcacatttttcaaggtgaataagtaaggtgttcggggttcgaacctcaacccctgcatataacaatgcatg 18065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 23664067 - 23663995
Alignment:
Q  534 aattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||| |||||||| |||||||| |||||||  |||||||||||||| |||| ||||| ||| |||||||||    
T  23664067 aattcacttttttcaaggtgaataaatgggtgtatggagttcgaaccccaaccc-tgcatataataatgcatgt 23663995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 44240084 - 44240133
Alignment:
Q  531 taaaattcacctttttcaaagtgaataattgggtgttcggagttcgaacc 580  Q
    ||||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  44240084 taaaattcatcttttttaaagtgaataagtgggagttcggagttcgaacc 44240133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 10602104 - 10602029
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcg-gagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||| |||||||||||||||||| |||| ||| || | |||||||||||| ||| ||||| |||||||||||||    
T  10602104 aattcatctttttcaaagtgaataagtggggtgtccgtgggttcgaaccccgtcccctgcatataacaatgcatgt 10602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 1244667 - 1244593
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| | |||||| ||| ||||||||||| |||| ||||| || ||||| ||||    
T  1244667 aattcacctttttcaaggtgaataagtggggtgtccggggttcgaacccccacccctgcatatagcaatgtatgt 1244593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 12206596 - 12206542
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgaccc 587  Q
    |||||||||||||||| ||||||||  ||| ||||||| ||||||||||||||||    
T  12206596 aattcacctttttcaaggtgaataagcggggtgttcggggttcgaaccccgaccc 12206542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 25406647 - 25406721
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||| ||| |||||||| |||| ||| ||||||||||||||||||||||  || ||| |||||||||    
T  25406647 aattgaccttttccaaggtgaataagtggggtgtccggagttcgaaccccgacccatatatataataatgcatgt 25406721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 26975291 - 26975369
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| |||| |||||||| ||||||||||| ||||||| ||| |||||||||||  ||  ||||| || ||||||||||    
T  26975291 gttagaattaaccttttttaaagtgaataactgggtgtccggggttcgaaccccagcctctgcatatagcaatgcatgt 26975369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 32256234 - 32256180
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgaccc 587  Q
    |||||| ||||||||| |||||||| |||| ||| ||||||||||||||||||||    
T  32256234 aattcaactttttcaatgtgaataagtgggatgtccggagttcgaaccccgaccc 32256180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 37123284 - 37123210
Alignment:
Q  534 aattcacctttttcaaagtgaataatt-gggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||| |||||| ||||||||||| | |||||| ||||||||||| | |||||| ||||| ||| |||||||||    
T  37123284 aattcatcttttttaaagtgaataagtagggtgtccggagttcgaatctcgacccctgcatataataatgcatgt 37123210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 39334878 - 39334952
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||||||||||| |||| |||  ||||||||||||||  ||| || || ||| |||||||||    
T  39334878 aattcacctttttcaaagtgaataagtgggatgtctggagttcgaaccccagcccctgtatataataatgcatgt 39334952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 605
Target Start/End: Complemental strand, 407578 - 407505
Alignment:
Q  532 aaaattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    ||||||||| ||||||||  ||||||| ||||   |||| |||||||| ||||||| ||||| |||||||||||    
T  407578 aaaattcacttttttcaagctgaataaatggggtgtcggggttcgaactccgacccttgcatataacaatgcat 407505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 602
Target Start/End: Complemental strand, 10767056 - 10767016
Alignment:
Q  562 ggtgttcggagttcgaaccccgacccatgcatttaacaatg 602  Q
    |||||||||||||||||||||||||| | ||| ||||||||    
T  10767056 ggtgttcggagttcgaaccccgacccctacatataacaatg 10767016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 11133146 - 11133102
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||| ||| |||||||||||||||| ||||| |||||||||||    
T  11133146 gggtgtccggggttcgaaccccgacccctgcatataacaatgcat 11133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 26767760 - 26767812
Alignment:
Q  48 aatgctagcaaatttctcttttaaacactatatctaatactcactcttttatt 100  Q
    |||||||||||   | |||||| |||||| |||||||||||||||||||||||    
T  26767760 aatgctagcaacactttcttttgaacactctatctaatactcactcttttatt 26767812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 13769 - 13833
Alignment:
Q  334 catggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctggagtttgctat 398  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| || |||||    
T  13769 catggacaatatttcaacagctctgtaatatgtgcatttgtttttggctttctggaattagctat 13833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 13680 - 13729
Alignment:
Q  205 ataaattatggtgccaccttagactttatgtagctaagtgtctaattgaa 254  Q
    ||||||||||||||||| ||||||||||||||||||| |||  |||||||    
T  13680 ataaattatggtgccactttagactttatgtagctaactgttaaattgaa 13729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 28537233 - 28537159
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||| |||||||||||||||| |||| ||| ||| |||||||||||| ||||||||| |||||||||||||    
T  28537233 aattcaccattttcaaagtgaataagtggggtgtccggggttcgaaccccggcccatgcatataacaatgcatgt 28537159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 27006438 - 27006365
Alignment:
Q  534 aattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgcatg 606  Q
    |||||||||||||||| |||||||| ||| |||| ||||||||||||||||||||  |||| ||||||||||||    
T  27006438 aattcacctttttcaaggtgaataagtggagtgtccggagttcgaaccccgaccccagcatataacaatgcatg 27006365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 41405082 - 41405159
Alignment:
Q  531 taaaattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||||||||||||||||||| ||||  |  |||| ||||||||||| ||||| |||||||||||||    
T  41405082 taaaattcacctttttcaaagtgaataattggagtgtctgcggttccaaccccgacccttgcatataacaatgcatgt 41405159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 532 - 607
Target Start/End: Original strand, 32252914 - 32252990
Alignment:
Q  532 aaaattcacctttttcaaagtgaat-aattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||| ||||||||||||||| ||||||||||  || |||||||||||||||| | ||| ||| |||||||||    
T  32252914 aaaattcacatttttcaaagtgaataaattgggtgtctggggttcgaaccccgacccctacatataataatgcatgt 32252990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 31556916 - 31556842
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||| ||||||| |||||||| |||| ||| ||| |||||||| ||||||| ||||| |||||||||||||    
T  31556916 aattcacccttttcaaggtgaataagtggggtgtccggggttcgaactccgacccctgcatataacaatgcatgt 31556842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 38040363 - 38040290
Alignment:
Q  534 aattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||  ||||||| ||||   || ||||||||||| |||||| ||||| |||||||||||||    
T  38040363 aattcacctttttcaagatgaataagtgggatgtccgagttcgaacctcgacccctgcatataacaatgcatgt 38040290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 608
Target Start/End: Original strand, 42260717 - 42260792
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgta 608  Q
    |||||| |||||| || |||||||| |||| ||| ||||||||||| ||||| || ||||| ||||||||||||||    
T  42260717 aattcatctttttaaaggtgaataagtgggatgtccggagttcgaaacccgaaccctgcatataacaatgcatgta 42260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 42553133 - 42553211
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||| |||||||| |||||||| ||  |||| ||| |||||||||||||||| ||||| |||||||||||||    
T  42553133 gttagaattcacatttttcaaggtgaataagtgtagtgtccggggttcgaaccccgaccc-tgcatataacaatgcatgt 42553211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 580
Target Start/End: Original strand, 31280377 - 31280423
Alignment:
Q  534 aattcacctttttcaaagtgaataattgggtgttcggagttcgaacc 580  Q
    |||||||||||||||| ||| |||| ||||||||||| |||||||||    
T  31280377 aattcacctttttcaaggtggataagtgggtgttcggggttcgaacc 31280423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 18872591 - 18872547
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||||| |||||||||||||||| ||||| ||| |||||||    
T  18872591 gggtgttcggggttcgaaccccgacccctgcatataataatgcat 18872547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 9768806 - 9768880
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||| ||||| |||||||||||||    
T  9768806 aattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgt 9768880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 601
Target Start/End: Complemental strand, 24889242 - 24889170
Alignment:
Q  530 ttaaaattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaat 601  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||| || || |||||||    
T  24889242 ttaaaattcacctttttcaaagtgaataagtggggtgttcggagttcgaacctcggcccttgtatataacaat 24889170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 2903024 - 2903098
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||| |||||||||| |||||||| |||| ||||||| |||||||||||||||  ||||| |||||||||||||    
T  2903024 aattctcctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacctctgcatataacaatgcatgt 2903098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 12553292 - 12553217
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaa-ccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||||||||||| | |||||| ||| ||||||| ||||| ||| ||||| |||||||||||||    
T  12553292 aattcacctttttcaaagtgaataagtggggtgtccggggttcgaacccccggcccctgcatataacaatgcatgt 12553217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 18003914 - 18003840
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||| | |||||||| |||| ||||||| | |||||||||| ||| ||||| |||||||||||||    
T  18003914 aattcacctttttccaggtgaataagtggggtgttcggggctcgaaccccggcccctgcatataacaatgcatgt 18003840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 18646789 - 18646712
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||| |||| | |||| ||||| | |||||||||||    
T  18646789 gttagaattcacctttttcaaagaaaataagtgggtgttcggagttcaaaccgcaaccc-tgcatatcacaatgcatgt 18646712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 41677158 - 41677104
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgaccc 587  Q
    |||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||    
T  41677158 aattcacctttttcaaggtgaataagtggggtgtccggagttcgaaccccgaccc 41677104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 50199473 - 50199547
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||||||| |||||||| |||| ||| ||| |||||||||||| ||| ||||| |||||||||||||    
T  50199473 aattgacctttttcaaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcatgt 50199547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 605
Target Start/End: Complemental strand, 23750253 - 23750176
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||| ||||||||||||||||  ||||||| |||| ||||| | ||| ||||||||||||||| || |||||||||||    
T  23750253 gttagaattcacctttttcaagatgaataagtggggtgttcagggtttgaaccccgacccatgtatataacaatgcat 23750176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 33844715 - 33844655
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcat 593  Q
    ||||||||||||||||||||||||| | |||||| ||| ||||||||||||| || |||||    
T  33844715 aattcacctttttcaaagtgaataagtggggtgtccggggttcgaaccccgatccttgcat 33844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 593
Target Start/End: Original strand, 33949263 - 33949323
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcat 593  Q
    ||||||||||||||||||||||||| | |||||| ||| ||||||||||||| || |||||    
T  33949263 aattcacctttttcaaagtgaataagtggggtgtccggggttcgaaccccgatccttgcat 33949323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 568 - 607
Target Start/End: Complemental strand, 42908834 - 42908795
Alignment:
Q  568 cggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  42908834 cggagttcgaaccccgacccctgcatataacaatgcatgt 42908795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 1721238 - 1721164
Alignment:
Q  534 aattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||| || |||||||| || ||||| ||| ||||||| |||| ||| ||||| |||||||||||||    
T  1721238 aattcaccttttttaaggtgaataagtgaggtgtccggggttcgaaacccggcccctgcatataacaatgcatgt 1721164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 3341733 - 3341807
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| | |||||| ||| |||||| ||||| ||| ||||| ||| |||||||||    
T  3341733 aattcacctttttcaaggtgaataagtggggtgtccggggttcgatccccggcccctgcatataataatgcatgt 3341807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 11238025 - 11238099
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||  ||||||| |||| ||| |||  ||||||||||||||| ||||| ||| |||||||||    
T  11238025 aattcacctttttcaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatataataatgcatgt 11238099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 40454169 - 40454242
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||| ||  |||||||| |||||||| |||||||||||||||| ||| ||||| ||| |||||||||    
T  40454169 aattcaccttttgcag-gtgaataagttgggtgtccggagttcgaaccccggcccttgcatataataatgcatgt 40454242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 7015678 - 7015758
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataa--ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||| |||||||| |||||| |  | |||||||||||||||||||| |  ||| | ||| |||||||||||||    
T  7015678 gttaaaattcacatttttcaaggtgaattaagtggggtgttcggagttcgaacctcagcccctacatataacaatgcatgt 7015758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 602
Target Start/End: Complemental strand, 41182871 - 41182803
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatg 602  Q
    |||||||||||| |||||||||||| |||| ||| ||| |||| ||||||||||| ||||| ||||||||    
T  41182871 aattcacctttt-caaagtgaataagtggggtgtccggggttcaaaccccgacccctgcatataacaatg 41182803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 11405526 - 11405482
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||| ||| |||||||||||||||| ||||| |||||||||||    
T  11405526 gggtgtccggggttcgaaccccgacccctgcatataacaatgcat 11405482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 605
Target Start/End: Complemental strand, 31965610 - 31965538
Alignment:
Q  534 aattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    ||||||| ||||  || |||||||| || ||||||||||||||||||||||| || ||||| ||| |||||||    
T  31965610 aattcactttttaaaaggtgaataagtgaggtgttcggagttcgaaccccgatccctgcatataataatgcat 31965538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 607
Target Start/End: Original strand, 52961081 - 52961153
Alignment:
Q  536 ttcacctttttcaaagtgaataattgggt-gttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||| ||| |||||||| ||||  || ||| |||||||||||| ||| ||||| |||||||||||||    
T  52961081 ttcaccttttccaacgtgaataagtggggcgtccggggttcgaaccccggcccctgcatataacaatgcatgt 52961153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 44409303 - 44409225
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| |||||||||||||||| |||||||| |||| ||||||| |||||||||||||||| ||||| ||| |||||||||    
T  44409303 gttagaattcacctttttcaaggtgaataagtggggtgttcgg-gttcgaaccccgacccttgcatataataatgcatgt 44409225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 10020466 - 10020540
Alignment:
Q  534 aattcacctttttcaaagtgaataattgggt-gttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||  ||||||| ||||| |||||| ||||||||||| |||| ||||| |||||||||||||    
T  10020466 aattcacctttttcaagatgaataagtgggttgttcggggttcgaaccccaacccctgcatataacaatgcatgt 10020540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 607
Target Start/End: Complemental strand, 35195938 - 35195867
Alignment:
Q  537 tcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||| |||||||| |||| ||||||| |||||||||||| ||| ||||| ||| |||||||||    
T  35195938 tcacctttttcaaggtgaataaatggggtgttcggggttcgaaccccggcccctgcatataataatgcatgt 35195867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 605
Target Start/End: Original strand, 7162659 - 7162737
Alignment:
Q  528 agttaaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    ||||| ||||||||||||||||  ||||||| |||  | ||| |||||||||||||||||| ||||| |||||||||||    
T  7162659 agttagaattcacctttttcaagatgaataagtggaatattcagagttcgaaccccgacccctgcatataacaatgcat 7162737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 605
Target Start/End: Original strand, 24304294 - 24304352
Alignment:
Q  548 aaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    ||||||||||| |||| |||||||||||||||||||||||| ||||| ||| |||||||    
T  24304294 aaagtgaataaatggggtgttcggagttcgaaccccgacccctgcatataataatgcat 24304352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 39524785 - 39524713
Alignment:
Q  534 aattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatg 606  Q
    ||||||||||||||||||| ||||| || |||||||||| |||||||| | |||| ||||| ||||||||||||    
T  39524785 aattcacctttttcaaagtaaataaatgaggtgttcgga-ttcgaacctcaacccctgcatataacaatgcatg 39524713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 3246481 - 3246533
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaacc 580  Q
    |||| ||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  3246481 gttagaattcacctttttcaaagtaaataagtagggtgttcggagttcgaacc 3246533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 11808142 - 11808062
Alignment:
Q  529 gttaaaattcacctttttcaaag-tgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||| |||||| ||| ||||||| |||| ||| ||| |||||||||||||||| ||||| |||||||||||||    
T  11808142 gttagaattcacgtttttctaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgt 11808062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 16814800 - 16814721
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||| ||||||||||||||||| ||| ||||  || |||||||||||||||| | ||| ||| |||||||||    
T  16814800 gttagaattcacatttttcaaagtgaataagtggagtgtctggggttcgaaccccgacccctacatataataatgcatgt 16814721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 6054217 - 6054296
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| |||||||||||||||| |||||||| || |||||||||||||||||| ||||||  ||||| ||||||| |||||    
T  6054217 gttagaattcacctttttcaaggtgaataagtgaggtgttcggagttcgaactccgacctctgcatctaacaatacatgt 6054296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 609
Target Start/End: Complemental strand, 28951969 - 28951888
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgtat 609  Q
    |||| ||||||| |||||||| |||||||| |||| ||||||| |||||||||| ||||| ||||| ||| |||||||||||    
T  28951969 gttagaattcacatttttcaaggtgaataagtggggtgttcggggttcgaaccctgacccctgcatataataatgcatgtat 28951888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 606
Target Start/End: Complemental strand, 32080153 - 32080080
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatg 606  Q
    |||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||| ||| ||| ||| ||||    
T  32080153 aattcacctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacccatacatataataattcatg 32080080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 605
Target Start/End: Complemental strand, 36842265 - 36842188
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||| ||||||| ||||||||||||||||| |||| ||| ||| |||||||||||||||| || |||||| |||||||    
T  36842265 gttagaattcacttttttcaaagtgaataagtgggatgtacggggttcgaaccccgacccctgaatttaaaaatgcat 36842188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 542 - 605
Target Start/End: Original strand, 42665930 - 42665994
Alignment:
Q  542 tttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||| |||||||| |||| ||| |||||||||||| ||||||| |||||||||||||||||    
T  42665930 tttttcaaggtgaataagtggggtgtccggagttcgaactccgacccctgcatttaacaatgcat 42665994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 607
Target Start/End: Complemental strand, 55318121 - 55318041
Alignment:
Q  528 agttaaaattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||| ||||||||||||||||| | |||||| ||| ||||||| ||| |||| | ||||||||||| |||||    
T  55318121 agttaaaattcacttttttcaaagtgaataagtggggtgtccggggttcgaatcccaacccctacatttaacaatacatgt 55318041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 4045626 - 4045705
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| ||||||||||||||||  ||||||| |||| ||| || |||||||||| |||||| ||||| |||||||||||||    
T  4045626 gttagaattcacctttttcaagatgaataagtggggtgtccgaagttcgaacctcgacccctgcatataacaatgcatgt 4045705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 24160525 - 24160599
Alignment:
Q  534 aattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||| |||||| ||||||||||| ||| |||| ||| |||||||||||||||| ||||| ||||| |||||||    
T  24160525 aattcaactttttgaaagtgaataagtggagtgtccggggttcgaaccccgacccctgcatataacagtgcatgt 24160599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 794006 - 794079
Alignment:
Q  534 aattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||| |||||||| |||||| ||||||| ||| ||||||| |||| |||  |||| |||||||||||||    
T  794006 aattcacctctttcaaagagaataagtgggtgtccggggttcgaatcccggcccccgcatataacaatgcatgt 794079  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 607
Target Start/End: Original strand, 3461715 - 3461795
Alignment:
Q  529 gttaaaattcacctttttcaaagtgaataattggg--tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||| |||||||||| |||||| ||||||| ||||  ||||||| ||||||||||| |||| | ||| |||||||||||||    
T  3461715 gttagaattcaccttattcaaaatgaataaatgggggtgttcggggttcgaaccccaacccctacatataacaatgcatgt 3461795  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 603
Target Start/End: Original strand, 22432908 - 22432978
Alignment:
Q  534 aattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgc 603  Q
    |||| |||||||||||||||||||| ||| |||| ||| ||| |||||||| ||| ||||| |||||||||    
T  22432908 aatttacctttttcaaagtgaataagtggagtgtccggggtttgaaccccggcccctgcatataacaatgc 22432978  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 23237460 - 23237386
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||  |||| ||| |||||||||||| ||||||| | ||| ||| |||||||||    
T  23237460 aattcacctttttcaacgtgaatatgtgggatgtccggagttcgaactccgacccctacatataataatgcatgt 23237386  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 51017887 - 51017814
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||| ||||||||||||||||| | |||||| ||| |||||||| ||||| | ||||| |||||||||||||    
T  51017887 aattcacttttttcaaagtgaataagtggggtgtccgg-gttcgaactccgactcctgcatataacaatgcatgt 51017814  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 31902200 - 31902276
Alignment:
Q  531 taaaattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||| |||||||| || |||||||| |||| ||| |||||||||||||||||||| | ||| ||| |||||||||    
T  31902200 taaaatttaccttttt-aaggtgaataagtggggtgtccggagttcgaaccccgacccctacatataaaaatgcatgt 31902276  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 44592097 - 44592024
Alignment:
Q  534 aattcacctttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| | | |||||||  || |||| | ||||| ||||| |||||||||||||    
T  44592097 aattcacctttttcaaggtgaataagtagatgttcgggttttgaactctgacccctgcatataacaatgcatgt 44592024  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 593
Target Start/End: Original strand, 21248987 - 21249047
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcat 593  Q
    |||||||||||||||| |||||||| | |||||||| | |||||||||||| ||| |||||    
T  21248987 aattcacctttttcaaggtgaataagtggggtgttcagggttcgaaccccggcccctgcat 21249047  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 26583181 - 26583125
Alignment:
Q  552 tgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||| ||||| || ||||||||||||||||| ||||| ||| |||||||||    
T  26583181 tgaataattgaggtgtccgtagttcgaaccccgacccctgcatataataatgcatgt 26583125  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 32508819 - 32508863
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||||| |||||||||||||||| ||||| ||| |||||||    
T  32508819 gggtgttcggggttcgaaccccgacccctgcatataataatgcat 32508863  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 42271038 - 42271082
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||| |||||||||||||||| ||| ||||| |||||||||||    
T  42271038 gggtgtccggagttcgaaccccggcccctgcatataacaatgcat 42271082  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 561 - 607
Target Start/End: Original strand, 7374075 - 7374121
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  7374075 gggtgttcggagttcgaactccgacccatacatataacaatgcatgt 7374121  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 30833115 - 30833041
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||| |||||||||| | |||||| |||| ||| ||| |||||||||||||||| ||||| |||||||||||||    
T  30833115 aattctcctttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgt 30833041  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 34524973 - 34524899
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||| | |||||||| |||| ||||||| | |||||||||| ||| ||||| |||||||||||||    
T  34524973 aattcacctttttccaggtgaataagtggggtgttcggggctcgaaccccggcccctgcatataacaatgcatgt 34524899  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 14949016 - 14949091
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg--tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| |||||||| ||||  ||| |||||||||||||||||||  ||||| ||| |||| ||||    
T  14949016 aattcacctttttcaaggtgaataaatgggggtgtccggagttcgaaccccgacctctgcatataataatgtatgt 14949091  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 1488186 - 1488112
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||| |||| || |||||||| |||| |||| || |||||||||||||||  ||||| |||||||||||||    
T  1488186 aattcaccatttttaaggtgaataaatggggtgtttggggttcgaaccccgacctctgcatataacaatgcatgt 1488112  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 19680245 - 19680319
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||||||||| | |||||| |||| ||| ||| |||||||||||| | | ||||| |||||||||||||    
T  19680245 aattcacctttttcaaggagaataagtggggtgtccggggttcgaaccccggctcctgcatataacaatgcatgt 19680319  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 599
Target Start/End: Complemental strand, 574313 - 574257
Alignment:
Q  543 ttttcaaagtgaataattgggtgttcggagttcgaaccccgacccatgcatttaaca 599  Q
    ||||||| |||||||| ||||||| ||| |||||||||||||||| ||||| |||||    
T  574313 ttttcaaggtgaataagtgggtgtccggggttcgaaccccgacccctgcatataaca 574257  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 7345526 - 7345452
Alignment:
Q  534 aattcacctttttcaaagtgaataa-ttgggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||| || |||||||| | ||||||| |||||| ||| |||||||| ||||| ||| |||||||||    
T  7345526 aattcaccttttttaaggtgaataagtggggtgtttggagttggaagcccgacccctgcatataataatgcatgt 7345452  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 22847259 - 22847333
Alignment:
Q  534 aattcacctttttcaaagtgaataattg-ggtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||||||||||| || |||||||| || |||||  || ||||||||| |||||| ||||| |||||||||||||    
T  22847259 aattcaccttttttaaggtgaataagtgaggtgtgtggggttcgaacctcgacccctgcatataacaatgcatgt 22847333  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 25470843 - 25470917
Alignment:
Q  534 aattcacctttttcaaagtgaataattggg-tgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    |||||||||| ||||| |||||||| |||| ||| ||  ||||||||||||||||||| || ||| |||||||||    
T  25470843 aattcaccttcttcaaggtgaataaatggggtgtccgaggttcgaaccccgacccatgaatataataatgcatgt 25470917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 605
Target Start/End: Original strand, 35301174 - 35301232
Alignment:
Q  548 aaagtgaataatt-gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    ||||||||||| | |||||| |||||||||||||||||||| ||||| ||| |||||||    
T  35301174 aaagtgaataagtagggtgtccggagttcgaaccccgacccctgcatataataatgcat 35301232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 605
Target Start/End: Original strand, 33570465 - 33570498
Alignment:
Q  572 gttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||||||||||||||||| |||||||||||    
T  33570465 gttcgaaccccgacccatgcatataacaatgcat 33570498  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 605
Target Start/End: Original strand, 13106391 - 13106439
Alignment:
Q  557 aattgggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||||||| ||| ||| |||| ||||||||||||| |||||||||||    
T  13106391 aattgggtgtccggggtttgaacaccgacccatgcatataacaatgcat 13106439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 43468730 - 43468774
Alignment:
Q  561 gggtgttcggagttcgaaccccgacccatgcatttaacaatgcat 605  Q
    |||||| |||||||||||||||||||| | ||| |||||||||||    
T  43468730 gggtgtccggagttcgaaccccgacccctacatataacaatgcat 43468774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 607
Target Start/End: Original strand, 34030 - 34104
Alignment:
Q  534 aattcacctttttcaaagtgaataattgg-gtgttcggagttcgaaccccgacccatgcatttaacaatgcatgt 607  Q
    ||||| ||||||| |||| |||||| ||| |||| |||| ||||||||||| ||| ||||| |||||||||||||    
T  34030 aattctccttttttaaagagaataagtggagtgtccggaattcgaaccccggcccctgcatataacaatgcatgt 34104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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