View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3764_high_20 (Length: 273)
Name: NF3764_high_20
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 37900943 - 37901181
Alignment:
| Q |
18 |
aatttaagaccaaactcagcattcacaagcctaaagaaagaccaaactatcttgatactcagccaaatatataaatatgattacttcaatagaattgaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37900943 |
aatttaagaccaaactcagcattcacaagcctaaagaaagaccaaactatcttgatactcagccaaatatataaatatgattacttcaatagaattgaca |
37901042 |
T |
|
| Q |
118 |
tttttactgtcaaaataacatgaagtacagttctggacccttgtaattgttctaaaatataatgactttccctaccaatcaactatatatttgaaaatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37901043 |
tttttactgtcaaaataacatgaagtacagttctggacccttgtaattgttctaaaatataatgactttccctaccaatcaactatatatttgaaaatct |
37901142 |
T |
|
| Q |
218 |
acaaaatcacggtgctcctgtgcaaatggacagaagcta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37901143 |
acaaaatcacggtgctcctgtgcaaatggacagaagcta |
37901181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 37907454 - 37907692
Alignment:
| Q |
18 |
aatttaagaccaaactcagcattcacaagcctaaagaaagaccaaactatcttgatactcagccaaatatataaatatgattacttcaatagaattgaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37907454 |
aatttaagaccaaactcagcattcacaagcctaaagaaagaccaaactatcttgatactcagccaaatatataaatatgattacttcaatagaattgaca |
37907553 |
T |
|
| Q |
118 |
tttttactgtcaaaataacatgaagtacagttctggacccttgtaattgttctaaaatataatgactttccctaccaatcaactatatatttgaaaatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37907554 |
tttttactgtcaaaataacatgaagtacagttctggacccttgtaattgttctaaaatataatgactttccctaccaatcaactatatatttgaaaatct |
37907653 |
T |
|
| Q |
218 |
acaaaatcacggtgctcctgtgcaaatggacagaagcta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37907654 |
acaaaatcacggtgctcctgtgcaaatggacagaagcta |
37907692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University