View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_high_21 (Length: 272)
Name: NF3764_high_21
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34540688 - 34540450
Alignment:
| Q |
1 |
atgaacatatatggtcctatggtttttcctttgtgtttttaaatccaaaaggtgataagcttcaatcggttgataaaacccataataaacttcccccatt |
100 |
Q |
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| T |
34540688 |
atgaacatatatggtcctatggtttttcctttgtgtttttaaatccaaaaggtgataagcttcaatcggttgataaaacccataataaactt-ccccatt |
34540590 |
T |
|
| Q |
101 |
acaacgacacataagcagaatctgtaatcagctcatggtagaaggt----gctgacccataacttctagaatggtttctaaccgaaaagagaaagtaaca |
196 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34540589 |
acaacgacatataagcagaatctgtaatcagctcatggtagaaggtgctggctgacccacaacttctagaatggtttctaaccgaaaagagaaagtaaca |
34540490 |
T |
|
| Q |
197 |
aaagttgatataatagaaacatgcatatagtaaacaaagg |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
34540489 |
aaagttgatataatagaaacatgcatatagcaaacaaagg |
34540450 |
T |
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