View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_high_24 (Length: 235)
Name: NF3764_high_24
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 24510749 - 24510578
Alignment:
| Q |
44 |
caattgaaccattcaattccatcaaccaattgacagaattgtaagtttgaaacaaccagggctctgcatctcctctagttctcctataaatgaaagtgag |
143 |
Q |
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| T |
24510749 |
caattgaaccattcaattccatcaaccaattgacagaattgtaagtttgaaacaaacagggctctgcatctcctctagttctcctacaaatgaaagtgag |
24510650 |
T |
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| Q |
144 |
ctatagaatttattcaaagatgcaggcaatcaaggtgcaaatgatttgctcctccataagcttaaaataaag |
215 |
Q |
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| T |
24510649 |
ctatataatttattcaaagatgcaggcaatcaatgtgcaaatgatttgctcctccataagcttaaaataaag |
24510578 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 24511384 - 24511344
Alignment:
| Q |
5 |
gagaacaatggccaaa-caatggcaaagaaccataccagcc |
44 |
Q |
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| T |
24511384 |
gagagcaatggccaaaacaatggcaaagaaccataccagcc |
24511344 |
T |
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