View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_high_5 (Length: 558)
Name: NF3764_high_5
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 34541215 - 34540668
Alignment:
| Q |
1 |
tttttattttcgccaatctcaaattccattaagactgtcttatggtgtgtttgattttacgtttgctcatggctgccgcacgtctagatgcccttttgtc |
100 |
Q |
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| T |
34541215 |
tttttattttcgccaatctaaaattccattaagactgtcttatg-tgtgtttgattttacgtttgctcatggctgccgcacgtctagacacccttttgtc |
34541117 |
T |
|
| Q |
101 |
gtgaaatcgagaagctagtaactgtagtttcactttaaatgagaattttt-gcgtgattttgactaaatgtggaaatcctgttgcgtaaccaaacaatgg |
199 |
Q |
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| T |
34541116 |
gtgaaatcgagaagctagtaattgtagtttcactttaaatgagaattttttgcgtgattttgactaaatgtggaaatcctgttgcgtaaccaaacaatgg |
34541017 |
T |
|
| Q |
200 |
ccgagttatatgagttgaattgagtgatttagcaattagtatgtcaaaatggaagataggtagtgttcaaaatgcaagaataacataaatacattcccta |
299 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
34541016 |
ccgagttatatgagttgaattgagcgatttagcaattagtatgtcaaaatggaagataggtagtgttcaaaatacaagaataacataattgcattcccta |
34540917 |
T |
|
| Q |
300 |
gacacatatagattgatccattgctgcattctgatgctagttacttttcttttttgtataggtgaagggatgcagaatgataacgttcttttgttctggc |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34540916 |
gacacatatagattgatccattgccgcattctgatgctagttacttttcttttttgtataggtgaagggatgcagaatgataacgttcttttgttctggc |
34540817 |
T |
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| Q |
400 |
aagtcaagcctgttgtacatgtctttcaggtgatactgattagtgttgattttatttcattgacaatgtattatgttgcagtcttagttctcctaagttg |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34540816 |
aagtcaagcctgttgtacatgtctttcaggtgatactgattagtgttgattttatttcattgacaatgtattatgttgcagtcttagttctcctaagttg |
34540717 |
T |
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| Q |
500 |
tcatatctttgcttgactaatatattcaatgaacatatatggtcctatg |
548 |
Q |
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| T |
34540716 |
tcatatctttgcttgactaatatattcaatgaacatatatggtcctatg |
34540668 |
T |
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