View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_high_9 (Length: 429)
Name: NF3764_high_9
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 30711364 - 30711780
Alignment:
| Q |
13 |
cataggggtcttgtgaaaagtgatgaacatgtgccatgatctctccatctaagagtatcatgtttataaggaggttttcaaaaattaacttaacaaaagg |
112 |
Q |
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| T |
30711364 |
cataggggtcttgtgaaaagtgatgaacatgtgccatgatctctccatctaagagtatcatgtttataaggaggttttcaaaaattaacttaacaaaagg |
30711463 |
T |
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| Q |
113 |
tgggtggccattgtatgaattaccattgtttgacaaaagcaatggtgaaaaatgatcatgaaatattgcaaagcaaacatgaaacaacattgtgtatgtt |
212 |
Q |
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| T |
30711464 |
tgggtggccattgtatgaattaccattgtttgacaaaagcaacagtgaaaaatgatcatgaaatattgcaaagcaaacatgaaacaacattgtgtatgtt |
30711563 |
T |
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| Q |
213 |
atggagatatataactcaagttgctccttggaaaaaccgaaaagaatgcaattgtgcttagatttaaataagcatgaacaatcaaagcatacattcacag |
312 |
Q |
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| T |
30711564 |
atggagatatataactcaagttgctccttggaaaaactgaaaagaatgcaattgtgcttagatttaaataagcatgaacaatcaaagcatacattcacag |
30711663 |
T |
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| Q |
313 |
agataattcacaatgatatgaagaattttttgtaccaatatcattgaccgagttacaaagcatgactttagtgtcctagaggaaacattgaaaggtggga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30711664 |
agataattcacaatgatatgaagaattttttgtaccaatatcattgaccgagttacaaagcttgactttagtgtcctagaggaaacattgaaaggtggga |
30711763 |
T |
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| Q |
413 |
tcaatttttctattcta |
429 |
Q |
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| T |
30711764 |
tcaattttactattcta |
30711780 |
T |
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