View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3764_low_13 (Length: 397)
Name: NF3764_low_13
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 30711781 - 30712161
Alignment:
| Q |
1 |
ggtcttgagtttctgatttacttggacctaagctacaatgattttaattcaccaagtattctgccaaatctatacaacttcatgcctctaaccttcaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30711781 |
ggtcttgagtttctgatttacttggacctaagctacaatgattttaattcaccaagtattctgccaaatctatacaacttcatgcctctaaccttcaata |
30711880 |
T |
|
| Q |
101 |
tttggacttattttcaaatattcata-tgataatttatatagtaaaacctcaaccttaacaatattgatttttacaaagagcccaattgtctttatttgg |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30711881 |
tttggacttattttcaaatattcatactgataatttatatagtaaaatctcaaccttagcaatattgattttcacaaagagcccaattgtctttatttgg |
30711980 |
T |
|
| Q |
200 |
tttctatgattcctaatttttcggtgctgcacttccgtctttgtaaactaaacatcatctaccgagggtcgtttataagattttgagtgtcatatgcaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
30711981 |
tttctatgattcctaatttttcggtgctacacttccgtctttgtaaattaaacatcatctaccgagggt-gttcataagattttgagtatcatatgcaaa |
30712079 |
T |
|
| Q |
300 |
gtatgaacttattatccttttttcctgtaagtgatcacgcacgcacgcgaacacaaaactatgtgtctgatttaagaatttt |
381 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30712080 |
gtatgaatttattatccttttttcctgtaagtgatcacgcacgcacgcgaacacaaaactatgtgtgtgatttaagaatttt |
30712161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 30715605 - 30715662
Alignment:
| Q |
301 |
tatgaacttattatccttttttcctgtaagtgatcacgcacgcacgcgaacacaaaact |
359 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
30715605 |
tatgaacttattgtccttttttcctgt-agtggtcacgcacgcacgcgcacacaaaact |
30715662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 30712315 - 30712426
Alignment:
| Q |
4 |
cttgagtttctgatttacttggacctaag-ctacaatgattttaattcaccaagtattctgccaaatctatacaacttc----atgcctctaaccttcaa |
98 |
Q |
| |
|
||||||||||| | ||||| || ||||| |||||||||||||||||||| || ||||| |||| |||| |||||||| |||||||||||||| || |
|
|
| T |
30712315 |
cttgagtttctaaactactttgatctaaggctacaatgattttaattcacaaa-tattccaccaattctacacaacttctaacatgcctctaaccttgaa |
30712413 |
T |
|
| Q |
99 |
tatttggacttat |
111 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30712414 |
tatttggacttat |
30712426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University