View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_low_15 (Length: 368)
Name: NF3764_low_15
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 8726805 - 8726477
Alignment:
| Q |
18 |
gagcttgctgttgtgattattggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaa |
117 |
Q |
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| T |
8726805 |
gagcttgctgttgtgattattggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaa |
8726706 |
T |
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| Q |
118 |
gagatattgaagagagcatgtttgtttgtttcgttatgcgatgaaaaagtcgttgtaagaagttactatgattttggaatgagaatgctcatcattttat |
217 |
Q |
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| T |
8726705 |
gagatattgaagagagcatgtttgtttgtttcgttatg-----------tcgttgtaagaagttactatgattttggaattagaatgctcatcattttat |
8726617 |
T |
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| Q |
218 |
atgaagaaggtggagtttgtgggttccactatagaaaaaagccgtggttgtaattgtgtttgttgatttgcaaagcacggaaatacttatctaatgggcg |
317 |
Q |
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| T |
8726616 |
atgaagaaggtggagtttgtgggtcccactatagaaaaaagccgtggttgtaattgtgtttgttgatttgcagagcacggaaatacttatctaatgggcg |
8726517 |
T |
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| Q |
318 |
attcaatagatacgtgctgactcagaatctccttgccttt |
357 |
Q |
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| T |
8726516 |
attctatagatacgtgctgactcagaatctccttgccttt |
8726477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 8707374 - 8707267
Alignment:
| Q |
35 |
tattggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaagagatattgaagagagc |
134 |
Q |
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| T |
8707374 |
tattggcttcgatctgacgcggcacggtggtggtgttacggtggcgccggagaagttaccggcggcgtagagagaagaaggaagagatatggaggaaagc |
8707275 |
T |
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| Q |
135 |
atgtttgt |
142 |
Q |
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| T |
8707274 |
atgtttgt |
8707267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 8695667 - 8695564
Alignment:
| Q |
39 |
ggctttgatctgacacgacacggcggtggtgttacggtggtgccggagaaattaccggcggcgtagagagaagaaggaagagatattgaagagagcatgt |
138 |
Q |
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| T |
8695667 |
ggctttgatttaacgcggcacgacggtggagtgacggacgtgccggagaagttaccggcggcgtagagagaagaaggaagagatatggaggaaagcatgt |
8695568 |
T |
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| Q |
139 |
ttgt |
142 |
Q |
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|||| |
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| T |
8695567 |
ttgt |
8695564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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