View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_low_25 (Length: 264)
Name: NF3764_low_25
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 47 - 246
Target Start/End: Original strand, 17656944 - 17657143
Alignment:
| Q |
47 |
gattggaactcttttcacttctatgatatgaaggcttttctctgttctgttggcgcacatcaatctcagcatgttcagaaccatcaggcatgccgcgatg |
146 |
Q |
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| T |
17656944 |
gattggaactcttatcacttctgtgatatgaaggcttttctctgttctgttggcgcacatcaatctcagcatgttcagaaccatcaggcgtgccgcgatg |
17657043 |
T |
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| Q |
147 |
tttttctttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaataagaatgctcagctcttctcttctgactttcatgtttttct |
246 |
Q |
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| T |
17657044 |
tttttctttgatccttctacttcgaccatccttttcaacatcagaatcatcggaagaataagaatgctcagctcttctcttctgactttcatgtttttct |
17657143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 53 - 246
Target Start/End: Original strand, 17730437 - 17730630
Alignment:
| Q |
53 |
aactcttttcacttctatgatatgaaggcttttctctgttctgttggcgcacatcaatctcagcatgttcagaaccatcaggcatgccgcgatgtttttc |
152 |
Q |
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| T |
17730437 |
aactcttttcacttctatgatatgaaggcttttctctgttctgttggcgcacatcaatctcagcatgttcagaaccatcaggcgtaccgcaatgtttttc |
17730536 |
T |
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| Q |
153 |
tttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaataagaatgctcagctcttctcttctgactttcatgtttttct |
246 |
Q |
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| T |
17730537 |
tttgatccttctacttcgaccatccttttcaacatcagaatcaacggaagaataagaacgctcagctctgctcttctgacttcgatgtttttct |
17730630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 17730619 - 17730723
Alignment:
| Q |
142 |
cgatgtttttctttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaataagaatgctcagctcttctcttctgactttcatgtt |
241 |
Q |
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| T |
17730619 |
cgatgtttttctttgatccttctacttcgacaatccttttcaacgtcagaatcatcggaagaataagaatgctcagctcttctcttcacacttccatctt |
17730718 |
T |
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| Q |
242 |
tttct |
246 |
Q |
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||||| |
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| T |
17730719 |
tttct |
17730723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 17730717 - 17730816
Alignment:
| Q |
147 |
tttttctttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaataagaatgctcagctcttctcttctgactttcatgtttttct |
246 |
Q |
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| T |
17730717 |
tttttcttttatccttctacttcgattatctttttcaacgtcagaatcatcggaagaataagaatgttcagctcttctcttcacacttccatatttttct |
17730816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 17731134 - 17731218
Alignment:
| Q |
150 |
ttctttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaataagaatgctcagctcttctcttctgactt |
234 |
Q |
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| T |
17731134 |
ttctttgatccttctactttgatcattcttttcaacatcagaatcattagaagaacaagaatgctcagacctgctcttctgactt |
17731218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 17730990 - 17731044
Alignment:
| Q |
150 |
ttctttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaa |
204 |
Q |
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| T |
17730990 |
ttctttgatccttctactttgatcattcttttcaacatcagaatcattagaagaa |
17731044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 17730810 - 17730906
Alignment:
| Q |
147 |
tttttctttgatccttctacttcgaccatccttttcaacatcagaatcattggaagaataagaatgctcagctcttctcttctgactttcatgtttttct |
246 |
Q |
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||||||||| |||||||| |||||| ||| ||||||| |||||||||| |||||||||||||| |||| ||| | ||| ||| || ||||||||||| |
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| T |
17730810 |
tttttcttttatccttctgcttcgatcattcttttca---tcagaatcatcagaagaataagaatgttcagttctgcgcttttgatttccatgtttttct |
17730906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 17731048 - 17731097
Alignment:
| Q |
157 |
atccttctacttcgaccatccttttcaacatcagaatcattggaagaata |
206 |
Q |
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| T |
17731048 |
atccttctacttcgatcattctttacaacatcagaatcatcggaagaata |
17731097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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