View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3764_low_3 (Length: 617)
Name: NF3764_low_3
Description: NF3764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3764_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 269 - 607
Target Start/End: Complemental strand, 19505499 - 19505166
Alignment:
| Q |
269 |
ccatttcgtggcatataagtatattgattgattcatgcttcacggattcgatcattcattgagctatactcgaattggtata-tannnnnnnggtgaaca |
367 |
Q |
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| T |
19505499 |
ccatttcgtggcatataactatattgattgattcatgcttcacggattcgatcattcattgagctatactcgaattggtataatactcaatatgt----- |
19505405 |
T |
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| Q |
368 |
ctcaatatgtataaaagtgcatgtaatgaacttgttgagagcttctaaataagctcaaaacttatggagcaaaaagtattttgttgtctacttgtacaca |
467 |
Q |
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| T |
19505404 |
-ttgttatatataaaagtgcatgtaatgaacttgttgagagcttctaaataagctcaaaacttatggagcaaaaaatattttgttgtctacttgtataca |
19505306 |
T |
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| Q |
468 |
aaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttatattttatcactgaagcttcttttaatcatggcatgagtcctta |
567 |
Q |
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| T |
19505305 |
aaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttatattttatcactgaagcttcttttaatcatggaatgagtcctta |
19505206 |
T |
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| Q |
568 |
tgtgtatgttacctatcgccatgttgtagctgggtctgtg |
607 |
Q |
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| T |
19505205 |
tgtgtatgttacctatcgccatgttgtagctgggtttgtg |
19505166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 19505795 - 19505652
Alignment:
| Q |
63 |
aagagaaactgcagtcatgagtgattaattcgaccgcaaaaataaattattcaagaaaatactcatcaatcaatgttgttattatattaaaaaagttagg |
162 |
Q |
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| T |
19505795 |
aagagaaactgcagtcatgagtgattaattcgaccgcaaaaataaattattcaagaaaatactcatcaatcactgttgttattatattaaaaaa-ttagg |
19505697 |
T |
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| Q |
163 |
caggtcccgataaaatatttgagtggaagctgcaatgactgagtg |
207 |
Q |
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| T |
19505696 |
caggtcccgataaaatatttgagtggaagctgcaatcactgagtg |
19505652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 425 - 607
Target Start/End: Original strand, 32883233 - 32883415
Alignment:
| Q |
425 |
aaacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttat |
524 |
Q |
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| T |
32883233 |
aaacttatggagaaaaaagtattttctcctctacatgtatacaaagagttcaagccacacctggtcatggttttagcccaagttggctatacctttttat |
32883332 |
T |
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| Q |
525 |
attttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcgccatgttgtagctgggtctgtg |
607 |
Q |
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| T |
32883333 |
attttatctctgaatcttccttcaatcatggaatgagtccttatgtttatgttacctatcggcatgttctcgctggggctgtg |
32883415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 426 - 585
Target Start/End: Original strand, 32917791 - 32917950
Alignment:
| Q |
426 |
aacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttata |
525 |
Q |
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| T |
32917791 |
aacttatggagcaaaaaatattttctcctctgcttggattcaagaagttcaagccacacttgatcatggtcttagcccaagttggctataccttcttata |
32917890 |
T |
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| Q |
526 |
ttttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcg |
585 |
Q |
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| T |
32917891 |
ttttatcagtgaagcttccttcaatcatggaatgagtccttatgtttatgttacatatcg |
32917950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 425 - 601
Target Start/End: Original strand, 32933819 - 32933995
Alignment:
| Q |
425 |
aaacttatggagcaaaaagtattttgttgtctacttgtacacaaaaagttcaagccacacctagtcatggtatttggccagttgggctataccttgttat |
524 |
Q |
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| T |
32933819 |
aaacttatggagcaaaaaatattctctcttctgcttgtatacagagagttcaagccacacctgctcatggtcttaacccaagttggctatactttaatat |
32933918 |
T |
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| Q |
525 |
attttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcgccatgttgtagctggg |
601 |
Q |
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| T |
32933919 |
tttttatcactcaagcttcgttcaatcatggaatgagtccttatgtttatgttacgtaccggcacgttgtcgctggg |
32933995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 579
Target Start/End: Original strand, 32949893 - 32949950
Alignment:
| Q |
522 |
tatattttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttac |
579 |
Q |
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| T |
32949893 |
tatattttatcactgaagcttccttcaatcatggaatgagtccttatgtttatgttac |
32949950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 585
Target Start/End: Original strand, 32893280 - 32893342
Alignment:
| Q |
523 |
atattttatcactgaagcttcttttaatcatggcatgagtccttatgtgtatgttacctatcg |
585 |
Q |
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| T |
32893280 |
atattttatcactgaaacttcattcaatcatggactgagtccttatgtttatgttacatatcg |
32893342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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